PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G21050.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 585aa    MW: 62752.1 Da    PI: 6.3714
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G21050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.21.3e-921755842374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                       +lL+ecA+av+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ ++++  s +++  + l f+e+sP+  f+
  OPUNC03G21050.1 175 AQLLMECARAVAARDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLAAASDRNA-SFDSTRRTALkFQELSPWTPFG 267
                      589************************************************************99888744.44444444446*********** PP

             GRAS  95 hltaNqaIleavege..................ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLa 166
                      h++aN aIle++ ++                  +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v++ ++     ++ ++e+g+rL+
  OPUNC03G21050.1 268 HVAANGAILESFLEAaaagaaasssssssstqpTRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPTAAPsaaAQRVMREIGQRLE 361
                      **********98665566667777788888888899************************8889********996655788999********** PP

             GRAS 167 kfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse..... 251
                      kfA+ +gvpf+f+++++  +l+dl+l +L++++     alaVn+v +l  +          rd++L  +++l P+vv+vve+ead+ ++     
  OPUNC03G21050.1 362 KFARLMGVPFRFRAVHHAgDLADLDLAALDLREggaTTALAVNCVNALRGVA-------RGRDAFLASLRRLDPRVVTVVEEEADLAASeadas 448
                      **************97767**************888889*********9998.......5589*********************9955558999 PP

             GRAS 252 .......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                             +F++ f e l+++sa ++sle+++p++s+e+ ++Er+ +gr+iv++v+c  +e++er+e  ++W +r+++aGF+p+++se++a++++
  OPUNC03G21050.1 449 seadtdaTFMKVFGEGLRFFSAYMNSLEESFPKTSNEKLSLERA-VGRAIVDLVSCPASESTERREAGASWARRMRSAGFSPAAFSEDVADDVR 541
                      9*******************************************.************************************************* PP

             GRAS 339 lllrkvksdgyrveee........sgslvlgWkdrpLvsvSaWr 374
                      +llr++k +g+++ +          + ++l Wk++++v++SaW+
  OPUNC03G21050.1 542 SLLRRYK-EGWSMRDAggatddaaAAGAFLAWKEQAVVWASAWK 584
                      *******.888888444445555578889**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.243148557IPR005202Transcription factor GRAS
PfamPF035144.4E-90175584IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MDTLFRLVSL HHHHHQHAAS SSPPDQPHKS YPSSHHTHTH NHSYYHHSHS HSHYNNNSRN  60
SNGGGGGGGY YYAEEQPAAY LEECSNDHRF YMDEDFSSSS SSRQFPSGTG APSSEPAPPP  120
PSSAGGHGLF EAADFSFPQV DISLDFGGSP VSSSSGAGAG TAPSSSSSSS GRWAAQLLME  180
CARAVAARDS QRVQQLMWML NELASPYGDV DQKLASYFLQ GLFARLTTSG PRTLRTLAAA  240
SDRNASFDST RRTALKFQEL SPWTPFGHVA ANGAILESFL EAAAAGAAAS SSSSSSSTQP  300
TRLHILDLSN TFCTQWPTLL EALATRSSDD TPHLSITTVV PTAAPSAAAQ RVMREIGQRL  360
EKFARLMGVP FRFRAVHHAG DLADLDLAAL DLREGGATTA LAVNCVNALR GVARGRDAFL  420
ASLRRLDPRV VTVVEEEADL AASEADASSE ADTDATFMKV FGEGLRFFSA YMNSLEESFP  480
KTSNEKLSLE RAVGRAIVDL VSCPASESTE RREAGASWAR RMRSAGFSPA AFSEDVADDV  540
RSLLRRYKEG WSMRDAGGAT DDAAAAGAFL AWKEQAVVWA SAWKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-1581205852420Protein SHORT-ROOT
5b3h_E1e-1581205852420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2311270.0AC231127.1 Oryza minuta clone OM__Ba0188M20, complete sequence.
GenBankAC2311290.0AC231129.1 Oryza minuta clone OM__Ba0174K19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629293.10.0protein SHORT-ROOT 2
SwissprotQ75I130.0SHR2_ORYSJ; Protein SHORT-ROOT 2
TrEMBLA0A0E0KFD50.0A0A0E0KFD5_ORYPU; Uncharacterized protein
STRINGOPUNC03G21050.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-131GRAS family protein