PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G21560.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 143aa MW: 15969.7 Da PI: 10.7059

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G21560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	26	2e-08	39	67	23	51
G2-like 23 GsekAtPktilelmkvkgLtlehvkSHLQ 51 ++ + k+ +++m+v gLt +++kSHLQ OPUNC03G21560.1 39 KAKPTAVKETMQAMGVTGLTTHNIKSHLQ 67 44444558889999*************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-7	37	67	IPR009057	Homeodomain-like
PRINTS	PR00686	2.5E-10	56	74	IPR000814	TATA-box binding protein
Gene3D	G3DSA:3.30.310.10	3.1E-9	68	99	IPR012295	Beta2-adaptin/TBP, C-terminal domain
SuperFamily	SSF55945	1.55E-6	68	102	No hit	No description
SuperFamily	SSF55945	4.71E-6	94	138	No hit	No description
Pfam	PF00352	5.3E-6	100	124	IPR000814	TATA-box binding protein
Gene3D	G3DSA:3.30.310.10	5.2E-7	100	125	IPR012295	Beta2-adaptin/TBP, C-terminal domain
PRINTS	PR00686	2.5E-10	103	119	IPR000814	TATA-box binding protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006352	Biological Process	DNA-templated transcription, initiation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MICTQNFLCP LVAPLPIFRQ HRDFQHRSRS QEEASPLGKA KPTAVKETMQ AMGVTGLTTH 60 NIKSHLQVCT GAKSEQQSKL AARKYARIIQ KLGYPAKFKD FKIQNIVGSC DVKFPIRLEG 120 LAYSYGAFSN KIVLTGAKKC SRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1qn7_B	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn8_A	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn8_B	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn9_A	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qn9_B	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qna_A	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qna_B	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qnb_A	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qnb_B	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qnc_A	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qnc_B	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qne_A	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1qne_B	2e-33	68	130	80	142	TRANSCRIPTION INITIATION FACTOR TFIID-1
1vok_A	2e-33	68	130	80	142	TATA-BOX-BINDING PROTEIN
1vok_B	2e-33	68	130	80	142	TATA-BOX-BINDING PROTEIN
1vol_B	2e-33	68	130	80	142	PROTEIN (TATA BINDING PROTEIN (TBP))
1vtl_E	1e-33	67	130	67	130	TATA BINDING PROTEIN (TBP)
1vtl_F	1e-33	67	130	67	130	TATA BINDING PROTEIN (TBP)
1vto_A	1e-33	68	130	70	132	TATA BINDING PROTEIN
1vto_B	1e-33	68	130	70	132	TATA BINDING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II.
UniProt	General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II.
UniProt	General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II.
UniProt	General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II.
UniProt	General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11971135}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK061103	4e-93	AK061103.1 Oryza sativa Japonica Group cDNA clone:006-207-B06, full insert sequence.
GenBank	CT830226	4e-93	CT830226.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103A15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	P48511	1e-36	TBP_MESCR; TATA-box-binding protein
Swissprot	P50158	1e-36	TBP1_MAIZE; TATA-box-binding protein 1
Swissprot	P50159	1e-36	TBP2_MAIZE; TATA-box-binding protein 2
Swissprot	Q42808	1e-36	TBP_SOYBN; TATA-box-binding protein
Swissprot	Q8W0W4	1e-36	TBP2_ORYSJ; TATA-binding protein 2
TrEMBL	A0A0E0KFK6	1e-102	A0A0E0KFK6_ORYPU; Uncharacterized protein
STRING	OPUNC03G21560.1	1e-103	(Oryza punctata)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Haass MM,Feix G Two different cDNAs encoding TFIID proteins of maize. FEBS Lett., 1992. 301(3): p. 294-8 [PMID:1577169] Vogel JM,Roth B,Cigan M,Freeling M Expression of the two maize TATA binding protein genes and function of the encoded TBP proteins by complementation in yeast. Plant Cell, 1993. 5(11): p. 1627-38 [PMID:8312743] Goddemeier ML,Feix G Genomic structure of the maize TATA-box binding protein 1 (TBP-1): conserved exon/intron structure in eukaryotic TBP genes. Gene, 1996. 174(1): p. 111-4 [PMID:8863736]