PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G22220.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 485aa    MW: 51412.1 Da    PI: 4.9583
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G22220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-1655102148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WTt Ed  lv+ v+q+G g+W+++ r  g+ R++k+c++rw ++l
  OPUNC03G22220.1  55 KGPWTTAEDAVLVQHVRQHGEGNWNAVQRITGLLRCGKSCRLRWTNHL 102
                      79******************************99***********996 PP
2Myb_DNA-binding513.3e-16108151146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
  OPUNC03G22220.1 108 KGSFSPDEELLIAQLHAQLGNK-WARMASHLP-GRTDNEIKNYWNT 151
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.91350102IPR017930Myb domain
SMARTSM007174.6E-1354104IPR001005SANT/Myb domain
SuperFamilySSF466892.06E-2854149IPR009057Homeodomain-like
PfamPF002492.6E-1355102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2056109IPR009057Homeodomain-like
CDDcd001671.97E-1057102No hitNo description
PROSITE profilePS5129422.55103157IPR017930Myb domain
SMARTSM007178.0E-15107155IPR001005SANT/Myb domain
PfamPF002493.8E-15108151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-24110156IPR009057Homeodomain-like
CDDcd001676.83E-11110151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEEMIKPAPA MSEEEKEVVA TAATGERRNE EATAEREEQE EEEEEAAAAP VVLKKGPWTT  60
AEDAVLVQHV RQHGEGNWNA VQRITGLLRC GKSCRLRWTN HLRPNLKKGS FSPDEELLIA  120
QLHAQLGNKW ARMASHLPGR TDNEIKNYWN TRTKRRQRAG LPVYPPDVQL HLAFAKRCRY  180
DDFSSPLSSP QQSAGSNVLT MDAADAAASA GYTSARPPPL DLAGQLAMGN RPVQFLSATP  240
FSAPSSPWGK PFARNAQFFQ FPHSSPVSPT TPTGPVHPVT PELSLGYGLH AGDRARLPPV  300
SPSPGARVEL PSSQLRPAMA PTASTTATAA GATGGLVGGA LQDHPNAASL EAMLQELHDA  360
IKIEPPALPE NRGTEGGGGG DMRGVSGDGK PEVELKDDIE TLFDLIIPAT FPAAPESAAA  420
TAASAAPNHS GSVSQHSSDD QDHSNADVVL DLPILTDGGG GSSEQDDWSL DGAACQWNNM  480
SGGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-285315625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1479620.0AC147962.1 Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629365.10.0transcription factor MYB65
TrEMBLA0A0E0KFS50.0A0A0E0KFS5_ORYPU; Uncharacterized protein
STRINGOPUNC03G22220.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.15e-66myb domain protein 101