PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G23800.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 337aa    MW: 36455.9 Da    PI: 7.4993
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G23800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26066.18.5e-21751145
           DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkl 45
                     +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kl
  OPUNC03G23800.1  7 PCAACKLLRRKCTQGCVFAPYFPPDQPAKFANVHKVFGASNVTKL 51
                     7******************************************97 PP
2DUF260115.53.3e-365214210100
           DUF260  10 rkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                      rkC++dCv+apyfp +qp+kfanvhk+FGasnv+kll++l++e+reda++sl+yeAear+rdPvyG+v+ i+ lq +++q++ +++ +++e
  OPUNC03G23800.1  52 RKCQPDCVFAPYFPPDQPAKFANVHKVFGASNVTKLLNDLQPEQREDAVNSLAYEAEARLRDPVYGCVAYISILQLRIKQVRDQIVDARKE 142
                      89**********************************************************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.3396143IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-20751IPR004883Lateral organ boundaries, LOB
PIRSFPIRSF0381558.0E-9152337IPR017414LOB domain-containing protein 10/36/41
PfamPF031952.8E-3552139IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DQPAKFANVH KVFGASNVTK LRKCQPDCVF  60
APYFPPDQPA KFANVHKVFG ASNVTKLLND LQPEQREDAV NSLAYEAEAR LRDPVYGCVA  120
YISILQLRIK QVRDQIVDAR KELAAYIGPT AFAPVVAAAA PHPHYLPPAD YHHQLQVQGG  180
GMGGGVPVAA GYAHQVQHQM AGLQVQHPHH HHHHQQMVNA QHMALAVEVA RDQDMLRARQ  240
AGHANAGATV AVEAPGSSLN ADTFDGGPFL LRQQPPSSVQ TEPAMALPYH MEPSPPQPSS  300
GHSHDEVSQH HPHHQHHHRH HHTDGSDEGS GGAAPPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4041588131LOB family transfactor Ramosa2.1
5ly0_B3e-4041588131LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629364.11e-152LOB domain-containing protein 36
RefseqXP_025879462.11e-152LOB domain-containing protein 36
SwissprotQ9FKZ33e-53LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A0E0KGA70.0A0A0E0KGA7_ORYPU; Uncharacterized protein
STRINGOPUNC03G23800.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.11e-51ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]