PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G23930.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 253aa MW: 25629.1 Da PI: 9.7103

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G23930.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.6	1.8e-35	51	105	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ OPUNC03G23930.1 51 REQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRP 105 579*************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.559	52	106	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.9E-31	52	104	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-23	53	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MAPGALLLPP ASFKHHDVAA AAAAADSMQA CLQPLPPPAA ASGCNGSGGS REQCPRCASH 60 DTKFCYYNNY NTSQPRHFCR ACRRYWTLGG SLRNVPIGGS TRKRPRPPVR RPPVHFAAAA 120 AAPPPPPTSS QQAGLLGSLF ALGAAPLLEG RVGFDLGLGL PGPGHHVVAG GGAGEVAATG 180 LHGLGRGGPA AVATSSSAPL LWHTGLLDSS SNNVETWKMA AGGGAAMWPE FTAAAAQVGG 240 LMRGGAQQQP QLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	106	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC107206	1e-106	AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBank	AK119803	1e-106	AK119803.1 Oryza sativa Japonica Group cDNA clone:002-176-F03, full insert sequence.
GenBank	AP014959	1e-106	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880163.1	5e-83	dof zinc finger protein MNB1A-like
TrEMBL	A0A0E0KGC5	1e-179	A0A0E0KGC5_ORYPU; Uncharacterized protein
STRING	OPUNC03G23930.1	1e-179	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-26	DOF zinc finger protein 1