PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G24190.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 372aa MW: 38943.4 Da PI: 7.0644

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G24190.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	71.1	1.7e-22	113	157	2	46
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+ OPUNC03G24190.1 113 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHM 157 9*****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.16E-8	110	156	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.5E-19	110	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.5E-15	113	156	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MATTAATAPD LSLHISPPSP PDMAAGGEMM EQLAEPKLCL GFGTAPAEQY NNGGCNLQQQ 60 QQQQRLHQPS QIQRFKKSAS GSPVCSGSVG GCGGAAARSG NGGGGGKRSS RAPRMRWTTA 120 LHAHFVQAVE LLGGHERATP KSVLELMNVK DLTLAHMYRT VKGTTDRTCA EGPGQMRDMG 180 FLRRGGSEVD GFDVLGNTSS IAIANIRRQA AGSPGEHHRQ EMISNAWCQQ PFAQQQSTCG 240 LPLPCPYIMS AHHYLVKQNQ VASCSCRLDA DDVVAAAAGP TDDDDDDVVD DDDEGQQRRS 300 SASMHEAAAT AAADAIEGAK PGDQPREAGV AKQQRQQQLG AAAAASSAPA AAAAQRGVLG 360 VQRTNATKVL VR

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MATTAATAPD LSLHISPPSP PDMAAGGEMM EQLAEPKLCL GFGTAPAEQY NNGGCNLQQQ  60
QQQQRLHQPS QIQRFKKSAS GSPVCSGSVG GCGGAAARSG NGGGGGKRSS RAPRMRWTTA  120
LHAHFVQAVE LLGGHERATP KSVLELMNVK DLTLAHMYRT VKGTTDRTCA EGPGQMRDMG  180
FLRRGGSEVD GFDVLGNTSS IAIANIRRQA AGSPGEHHRQ EMISNAWCQQ PFAQQQSTCG  240
LPLPCPYIMS AHHYLVKQNQ VASCSCRLDA DDVVAAAAGP TDDDDDDVVD DDDEGQQRRS  300
SASMHEAAAT AAADAIEGAK PGDQPREAGV AKQQRQQQLG AAAAASSAPA AAAAQRGVLG  360
VQRTNATKVL VR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC092780	1e-141	AC092780.6 Oryza sativa chromosome 3 BAC OSJNBb0079B16 genomic sequence, complete sequence.
GenBank	AP014959	1e-141	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629914.1	1e-133	uncharacterized protein LOC9269134 isoform X1
Refseq	XP_015629915.1	1e-133	uncharacterized protein LOC9269134 isoform X2
TrEMBL	A0A0E0KGG0	0.0	A0A0E0KGG0_ORYPU; Uncharacterized protein
STRING	OPUNC03G24190.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3742	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	2e-23	G2-like family protein