PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G24750.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 205aa MW: 21967.3 Da PI: 10.8084

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G24750.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.2	1.4e-13	77	101	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L+YP GApsV+CalC+++ OPUNC03G24750.1 77 CHGCRSVLRYPSGAPSVCCALCQAI 101 ***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.5E-12	74	104	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.9E-10	77	101	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MKTTKQQKSP PPPPPSRFLI LLLVAGERRR PVAGARSSRS SASLPGSHHH RCRRGVGDLV 60 LPAAAAAAPG MQSQIVCHGC RSVLRYPSGA PSVCCALCQA ITTVPPPAPG TGLAQWFHAF 120 ISVELGGRRL LCFDGRRTHS FDFIHHDLNY LGRNGNGSSN MWWLPNIADP PSRPQNVTVV 180 VENPMTVDEK GKLVSNVVVG VTTGK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111569	4e-75	AK111569.1 Oryza sativa Japonica Group cDNA clone:J013071E13, full insert sequence.
GenBank	CT830679	4e-75	CT830679.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA116O15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650331.1	2e-36	PREDICTED: protein LOL3
Refseq	XP_015690721.1	2e-36	PREDICTED: protein LOL3
Swissprot	Q6ASS2	5e-37	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A0E0KGN5	1e-148	A0A0E0KGN5_ORYPU; Uncharacterized protein
STRING	OPUNC03G24750.1	1e-149	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22220	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	5e-15	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]