PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G24750.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 169aa MW: 17791.9 Da PI: 10.6124

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G24750.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.5	1e-13	77	101	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L+YP GApsV+CalC+++ OPUNC03G24750.2 77 CHGCRSVLRYPSGAPSVCCALCQAI 101 ***********************97 PP
2	zf-LSD1	22.9	1.4e-07	118	131	1	14
zf-LSD1 1 CggCrtlLsYPrGA 14 CggCrtlL+Y+r+A OPUNC03G24750.2 118 CGGCRTLLMYTRNA 131 ************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-12	74	104	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.2E-10	77	101	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	7.9E-7	115	131	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.9E-5	118	131	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MKTTKQQKSP PPPPPSRFLI LLLVAGERRR PVAGARSSRS SASLPGSHHH RCRRGVGDLV 60 LPAAAAAAPG MQSQIVCHGC RSVLRYPSGA PSVCCALCQA ITTVPPPAPV MEMAHLICGG 120 CRTLLMYTRN ADTPPSRPQN VTVVVENPMT VDEKGKLVSN VVVGVTTGK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111569	1e-115	AK111569.1 Oryza sativa Japonica Group cDNA clone:J013071E13, full insert sequence.
GenBank	CT830679	1e-115	CT830679.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA116O15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650331.1	8e-41	PREDICTED: protein LOL3
Refseq	XP_015690721.1	8e-41	PREDICTED: protein LOL3
Swissprot	Q6ASS2	2e-41	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A0E0KGN6	1e-117	A0A0E0KGN6_ORYPU; Uncharacterized protein
STRING	OPUNC03G24750.1	5e-76	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	6e-23	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]