PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G25490.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 2113aa    MW: 231558 Da    PI: 7.6987
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G25490.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.83.1e-20358412455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55 
                      lrW+ +LH+ Fveav+  GG+ +A P ++   +++m+v gLt +++kSHLQkYR 
  OPUNC03G25490.2 358 LRWSDDLHKIFVEAVAYHGGPYEAKPTAVketMQAMGVTGLTTHNIKSHLQKYRE 412
                      89************************777222667889****************5 PP
2G2-like63.83.1e-2019572011455
          G2-like    4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55  
                       lrW+ +LH+ Fveav+  GG+ +A P ++   +++m+v gLt +++kSHLQkYR 
  OPUNC03G25490.2 1957 LRWSDDLHKIFVEAVAYHGGPYEAKPTAVketMQAMGVTGLTTHNIKSHLQKYRE 2011
                       89************************777222667889****************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000811.5E-157491IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF517352.58E-4674274IPR016040NAD(P)-binding domain
PfamPF001061.5E-4175270IPR002347Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7209.6E-5175284IPR016040NAD(P)-binding domain
CDDcd052333.38E-4875289No hitNo description
PRINTSPR000811.5E-15150161IPR002347Short-chain dehydrogenase/reductase SDR
PROSITE patternPS000610214242IPR020904Short-chain dehydrogenase/reductase, conserved site
PRINTSPR000811.5E-15227246IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000811.5E-15251268IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF466891.88E-11352414IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-18354413IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-15358412IPR006447Myb domain, plants
PfamPF102257.5E-45717967IPR019358NEMP family
PfamPF135202.6E-4711811545IPR002293Amino acid/polyamine transporter I
SuperFamilySSF517352.18E-2817011870IPR016040NAD(P)-binding domain
PfamPF001063.3E-2517031855IPR002347Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7202.1E-3117091863IPR016040NAD(P)-binding domain
CDDcd052336.08E-3117121866No hitNo description
PROSITE patternPS00061017991827IPR020904Short-chain dehydrogenase/reductase, conserved site
SuperFamilySSF466891.88E-1119512013IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-1819532012IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-1519572011IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003333Biological Processamino acid transmembrane transport
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0015171Molecular Functionamino acid transmembrane transporter activity
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 2113 aa     Download sequence    Send to blast
MAATATYLPL HAQAKVGLAP LRPSCSAAGT RLPGRPARRR LAARGGPEVA GIRAEAAPGG  60
GGIARREAMV PPYNVLITGS TKGIGYALAK EFLKAGDNVV ICSRSAERVE SAVTDLKKEF  120
GEQHVWGIVC DVREGKDVKA LVDFSRDKMK HIDIWINNAG SNAYSYKPLV ETSDEALMEV  180
ITTNTLGLMI CCREAINMMR NQPRGGHIFN IDGAGSDGRP TPRFAAYGAT KRSVVHLTKS  240
LQAELQMNEV NNVMVHNLSP GMVTTDLLMS GATTKQVADY LVPNIRAIPT NQSMKPTYIR  300
FLTGLKAYSR IFSRIAFGAR RNKIMSNSQP AQDDDASYMS SILVSRLILA MQPTRSYLRW  360
SDDLHKIFVE AVAYHGGPYE AKPTAVKETM QAMGVTGLTT HNIKSHLQKY RESFSSGAGS  420
LHDHDLLGTT SPSKEALDLT SEMVRDNDAA MAEIEMLNDL LLDHDIEMME KELMSEIKFI  480
EHNFEISESA LDEYMDDLAN YAFDLTGPAN SSSRPLVRRI RIWRRRRRPR EMTPAAEASS  540
SSAETTGSSA GSAPSTAAAA ATPHSSYRRT APPLLLLASL AALLIISTGD DTAAFDSATV  600
GRSIKDVSLE NPVVTFLPSS LGGQFCERVR LSGIPKLHIG SYANQIRVKM NVSQSMPEKF  660
HWKIEICFHG NASMGLCQCE TGEWQNLQNG MWNAVKSPYG NKYVDVKVAD KTSTRFSISI  720
QEEFQKWRLA CLGIGFILLF LSPIVSKWAP FYYSSSMALG VLLVVLIVLF QVGVGSYAVH  780
YFSTLVASIL ENFGLSEEMH NPVSIFLLVA IVLTGAGFGY WMVRRFILSK DGSVDAGIAQ  840
FVKWAMRVVA ICFVMQSTLD PLLALFALAA SWWICSVFTA YRAPKSTTLK QKQSKASTQP  900
MYNKGSPNPR QIQFLSPSKR DIGRTTSNSS ATQYGWSNLA NGGLVSPTLT KRVVPDNRDE  960
DHYSTFHNIQ PRKYSKEEWD DFTQKSTRKA LMECTATPEF ARWVADNAHR LRVEQQDDAS  1020
EDELIESSSN SSEETVQEAD TGLFSGRRFQ REGERERRRN PRETKKARAE EAVELSQPRR  1080
LTSPRFLPLR PPAAAQSPRN WRSSISEFFS DRIPRLFPAG ILGSWAIVMA LEDGGKAGRR  1140
RRGWGGGFPS LMRRKQVDSD RVRAAEGQGQ PQLAKELNIP ALVAIGVGST IGAGVYVLVG  1200
TVAREHAGPA LTISFLIAGI ASALSAFCYA ELASRCPSAG SAYHYSYICV GEGVAWLIGW  1260
ALVLEYTIGG SAVARGISPN LALFFGGPDS LPWILSRHQL PWFDVIVDPC AAALSSAVQG  1320
LITVLNACVM IFVIVAGSYI GFQIGWVGYK VTDGYFPHGI NGMLAGSATV FFAYIGFDTV  1380
ASTAEEVKNP QRDLPLGIGA ALSICCCLYM MVSVVIVGLV PYFAMDPDTP ISSVFAKHGM  1440
QWAMYIVTSG AVLALCSTLL GSLLPQPRIL MAMARDGLLP SFFADVNKRT QVPVKSTVVT  1500
GLCAAALAFF MDVSQLAGMV SVGTLLAFTI VAVSILILRY VPPDEVPLPS SLQETFCLSQ  1560
EYDEERVSGT LGDERCKTSE TKDVILAESM EDPLIEKKIT RKMDEMKRRK VAAFSIGSVC  1620
VGVLPVLASS LGLTKMMAGI LSANLEDLHA LSFHCYQSCL SSGAAWMRVG IWLLVGVLVY  1680
ILYGRTHSSL KDVIYVPVAQ ADEIHRSSSG YGIVCDVREG KDVKALVDFS RDKMKHIDIW  1740
INNAGSNAYS YKPLVETSDE ALMEVITTNT LGLMICCREA INMMRNQPRG GHIFNIDGAG  1800
SDGRPTPRFA AYGATKRSVV HLTKSLQAEL QMNEVNNVMV HNLSPGMVTT DLLMSGATTK  1860
QAKFFINILA EPPNVVADYL VPNIRAIPTN QSMKPTYIRF LTGLKAYSRI FSRIAFGARR  1920
NKIMSNSQPA QDDDASYMSS ILVSRLILAM QPTRSYLRWS DDLHKIFVEA VAYHGGPYEA  1980
KPTAVKETMQ AMGVTGLTTH NIKSHLQKYR ESFSSGAGSL HDHDLLGTTS PSKEALDLTS  2040
EMVRDNDAAM AEIEMLNDLL LDHDIEMMEK ELMSEIKFIE HNFEISESAL DEYMDDLANY  2100
AFDLTGPANS SSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6f34_A6e-67115015572424Amino acid transporter
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0664360.0AK066436.1 Oryza sativa Japonica Group cDNA clone:J013063A11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629597.10.0uncharacterized protein LOC4333602
TrEMBLA0A0E0KGY80.0A0A0E0KGY8_ORYPU; Uncharacterized protein
STRINGOPUNC03G25490.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109381212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.14e-13G2-like family protein