PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G25820.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 204aa    MW: 21302.2 Da    PI: 9.0906
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G25820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601407.7e-44381371100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++Cv+apyfp  +p+kfanvh++FGasnv+kll+++p ++r da+sslvyeA+ar+rdP+yG+vg i++lqqq+e l+a+l
  OPUNC03G25820.1  38 PCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHRVFGASNVSKLLQDIPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQVEALQAQL 131
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      al+++e
  OPUNC03G25820.1 132 ALAQAE 137
                      **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.74737138IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-4338135IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRDVVVAVGG GTKAASRQGQ GQGGVTLAAA ASGSAASPCA ACKLLRRRCA AGCVFAPYFP  60
PGEPHKFANV HRVFGASNVS KLLQDIPVQH RGDAVSSLVY EANARVRDPI YGCVGAISSL  120
QQQVEALQAQ LALAQAEMVR LRMSNDYITR RLRVRGGGGG GSTTTTTGSP SSMSSPAKTA  180
EPEPLCKPTP ELDMVVDQPD FGFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-50281401113LOB family transfactor Ramosa2.1
5ly0_B5e-50281401113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1391741e-147AC139174.3 Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence.
GenBankAP0149591e-147AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-147CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629600.11e-105LOB domain-containing protein 4
SwissprotQ8LBW39e-57LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0E0KH201e-147A0A0E0KH20_ORYPU; Uncharacterized protein
STRINGOPUNC03G25820.11e-148(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-35LOB domain-containing protein 4
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]