PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G26600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 359aa    MW: 37556.1 Da    PI: 7.1024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G26600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.31.8e-15179225455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  OPUNC03G26600.1 179 EHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDAVRYVKELQ 225
                      699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-18167236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.406175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-13178225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-19179239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.38E-16180229No hitNo description
SMARTSM003532.6E-16181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEDSSLFMEW AMETLEHLHP PPAPPPAGGY AGDNTTFPSL QALRESVSQN GMAPPEPTAH  60
EGHRASNSWS SGDTDSVSGG GGGGAVMEHD GWSTSPNSVR CAPGGGGLWP VSWNFSSAMT  120
QPCNEATPNM ATTRARYGGG VRELAAAVSA SPSPPTRRAS SKGNGGGSGS SSAAPYAQEH  180
IIAERKRREK INQRFIELST VIPGLKKMDK ATILSDAVRY VKELQEKLSE LEHQNGGVES  240
AVLAKKPCIA AASAPAAAGS STARSSLPEI EAKISHSNVM VRIHCDNGKG LLVRLLAAVE  300
GLHLGITHTN VMPFSACTAI VTIMAKVEEG LSVTAEDIVG KLNTVLQQNS RNSARETKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188ERKRRE
2184189RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071900.0AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
GenBankHQ8588620.0HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629952.10.0transcription factor NAI1
TrEMBLA0A0E0KHB30.0A0A0E0KHB3_ORYPU; Uncharacterized protein
STRINGOPUNC03G26600.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-39bHLH family protein