PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G26650.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 329aa    MW: 36477.7 Da    PI: 5.6653
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G26650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.1e-092432762255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  OPUNC03G26650.1 243 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 276
                      59*****************************885 PP
2ELK35.81.8e-12196217122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +Ll+KYsgyL+sL+ E+s
  OPUNC03G26650.1 196 ELKSHLLNKYSGYLSSLWRELS 217
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.8E-2258102IPR005540KNOX1
PfamPF037906.9E-2259100IPR005540KNOX1
SMARTSM012563.1E-26108159IPR005541KNOX2
PfamPF037911.4E-21113158IPR005541KNOX2
SMARTSM011882100117137IPR005539ELK domain
SMARTSM011884.0E-7196217IPR005539ELK domain
PfamPF037892.0E-9196217IPR005539ELK domain
PROSITE profilePS5121310.353196216IPR005539ELK domain
PROSITE profilePS5007112.455216279IPR001356Homeobox domain
SuperFamilySSF466892.65E-18217288IPR009057Homeodomain-like
SMARTSM003899.5E-12218283IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-25221280IPR009057Homeodomain-like
CDDcd000865.15E-11225279No hitNo description
PfamPF059207.1E-16236275IPR008422Homeobox KN domain
PROSITE patternPS000270254277IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEQQLPLLAP DSKAATSSPL CLTLDNPTST YTSPATPPPP AATALEPSRQ SFHERETDAI  60
KAKIMSHPLY PALLRAFIDC QKVGAPPEVV GRLSALAGEL DSRAEDRHQQ EQSSDPELDE  120
FMETYIDMLM SYRQELTRPI QEADQFFRNM EAQIDSFTLD DNGSEGGNSS EDEQEAGGRD  180
MGGLPEITSP CAEDKELKSH LLNKYSGYLS SLWRELSKKK KKGKLPRDAR QKLLHWWQLH  240
YRWPYPSELE KAALAESTGL DAKQINNWFI NQRKRHWKPT PPAMEYRSLQ PAAANYGAAG  300
AGASSSSAAV RGMEGQHFTG GGAYPRSGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6950030.0HQ695003.1 Oryza sativa fused compound leaf 1 (FCL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628832.10.0homeobox protein knotted-1-like 4
SwissprotQ75LX70.0KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A0E0KHB80.0A0A0E0KHB8_ORYPU; Uncharacterized protein
STRINGOPUNC03G26650.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-83KNOTTED-like from Arabidopsis thaliana