PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G26670.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 396aa    MW: 43534.6 Da    PI: 7.2183
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G26670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.2e-103423752255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yps++e++ LA+++gL+++q+++WF N+R ++
  OPUNC03G26670.1 342 WPYPSETEKAALAESTGLDKKQITNWFINQRKRH 375
                      58*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-195599IPR005540KNOX1
PfamPF037901.1E-195793IPR005540KNOX1
SMARTSM012561.3E-25111162IPR005541KNOX2
PfamPF037911.3E-20115160IPR005541KNOX2
PROSITE profilePS5007111.936315378IPR001356Homeobox domain
CDDcd000864.64E-12316378No hitNo description
SMARTSM003893.2E-11317382IPR001356Homeobox domain
SuperFamilySSF466891.8E-17317383IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-24322380IPR009057Homeodomain-like
PfamPF059201.7E-16335374IPR008422Homeobox KN domain
PROSITE patternPS000270353376IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEQLHLLASG GSKASNTIIP FCLARDHTTT SSPPAAVAPP ASSPAHGSGG QSSEAMIKAK  60
IMSHPLYPSL LRAFVDCRKV GAPPEVVGRL SSLTVVTDEL ESLSGDRPWH PAQQPAADPE  120
LDQFMETYFH MLTRYGQELA RPIQEAEEFF RSMEEQIESL ALGACIYSHY DEGRRCGGGG  180
WGSHGEGGVA IATTATPGRG SSRHHRESSR RHVEEEGAAA DAATSGRREL STAGSPCASP  240
RRLWIHAHER LPPPPPRWSE KEKDDVSYEG VASSEDMHAG LPENSAAFGD NEVMTSHLLN  300
KYSGNLNRLW TELCSKRKNS TGHLPRDARH KLLQWWHLHY RWPYPSETEK AALAESTGLD  360
KKQITNWFIN QRKRHWKPAA AMDAGFLHPR CGASSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6950041e-135HQ695004.1 Oryza sativa fused compound leaf 2 (FCL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0KHC00.0A0A0E0KHC0_ORYPU; Uncharacterized protein
STRINGOPUNC03G26670.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-31KNOTTED-like from Arabidopsis thaliana