PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G27010.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 340aa    MW: 36311.5 Da    PI: 6.2315
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G27010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.7e-082773092254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ +e+  LA  +gL+ +q+++WF N R +
  OPUNC03G27010.1 277 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 309
                      89*****************************88 PP
2BELL53.84.7e-181382001072
             BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      akLl ll e++ r+++y  +l+ v +sFe + g  + + Yt+l  +a+SrhF  L+ ai  ++
  OPUNC03G27010.1 138 AKLLRLLSELESRHEHYFGELRRVSASFEPALGAAATAGYTALMAQAMSRHFGDLRRAILRKL 200
                      8**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.2E-1072198IPR006563POX domain
PfamPF075261.5E-2277196IPR006563POX domain
PROSITE profilePS5007111.37250313IPR001356Homeobox domain
CDDcd000863.36E-11253314No hitNo description
SMARTSM003894.3E-9253317IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-26258319IPR009057Homeodomain-like
SuperFamilySSF466893.25E-17259321IPR009057Homeodomain-like
PfamPF059204.8E-17270309IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVASKQLHSQ RCGGHCQLHH HHPEEIAGAE SHRRDGSSGC GGAGPMVVLT LGSGAAAAED  60
DGCCCCAGAA PATIVSVLRD SRYLLPAQEL LHEAVSAAAA ASARGGDDEE AMGEAGDRAR  120
AEASFPHDGK STGGGVQAKL LRLLSELESR HEHYFGELRR VSASFEPALG AAATAGYTAL  180
MAQAMSRHFG DLRRAILRKL RLHAAAARRS ALLRLARDVV EDDEGDGDGE EEVVNRVVRR  240
TKQAAAARAE QAWRPLRGLP EDSVAVLRAW LFDHFLHPYP NDNEKLMLAV ATGLSRTQIS  300
NWFINARVRL WKPMVEEMYN DEFDDDDSAG GGGGSASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16259317563Homeobox protein Meis2
3k2a_B5e-16259317563Homeobox protein Meis2
4xrm_A5e-16259317563Homeobox protein Meis2
4xrm_B5e-16259317563Homeobox protein Meis2
5bng_A4e-16259317159Homeobox protein Meis2
5bng_B4e-16259317159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646650.0AK064665.1 Oryza sativa Japonica Group cDNA clone:002-115-B07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879418.11e-149BEL1-like homeodomain protein 11
TrEMBLA0A0E0KHF80.0A0A0E0KHF8_ORYPU; Uncharacterized protein
STRINGOPUNC03G27010.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.18e-36BEL1-like homeodomain 11