PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G27980.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 747aa    MW: 79070 Da    PI: 7.0755
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G27980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-07309329526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  OPUNC03G27980.1 309 PCPDFRK-GVCRRGDMCEYAHG 329
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127968.0E-1191160IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.46791166IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.18E-1591169IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01991121IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.2E-1792169IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.876126161IPR002110Ankyrin repeat
SMARTSM002480.039126158IPR002110Ankyrin repeat
PRINTSPR014157.3E-5127142IPR002110Ankyrin repeat
PRINTSPR014157.3E-5145159IPR002110Ankyrin repeat
SMARTSM003561.1E-5304330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4308331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375309331IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4309329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4337367IPR000571Zinc finger, CCCH-type
SMARTSM0035637339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MNGTPISASA AAGVDGVGAA VAAATKKSAA AAAAVAEMAK TLTVDTDDAF AGLLELAADD  60
GAEGLRRALE RAPPAAADEA GLWYGRRKVL EHRTPLMVAA TYGSLAVLRL LLSLPSVDVN  120
RRCGSDGTTA LHCAASGGSP SCVEAVKLLL AAGADADATD ASGYRPADVI SVPPKMFDAK  180
VALQDLLGCP KAGHGVLRVV TRAANSMSSP VSSPTAEDAR SPSAAVMMTT KFADLPRVVT  240
SEKKEYPVDP SLPDIKNSIY ASDEFRMYSF KIRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PDFRKGVCRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH  360
TTDELRPLYV STGSAVPSPR ASATAAMEMA AAMGLMPGSP SSVSAVMSPF TPPMSPSGNG  420
MPPSLGWQQP NVPTLHLPGS SLQSSRLRTS LSARDMPADD YSLMQDIDSQ LINDLCYSRL  480
GSSTGNHTSR TKSLNPSNLD DLFSAEMVSS PRYSNADQGG MFSPSHKAAF LNQFQQQQQA  540
LLSPINTVFS PKAVDNQQLP SHSSLLQASL GISSPGRMSP RCVESGSPMN SHLAAALAQR  600
EKQQQTMRSL SSRDLGPSAA RASGVVGSPL SSSWSKWGSP SGTPDWGVNG EELGKLRRSS  660
SFELRSGGDD PDLSWVHTLV KESPPEKQVT TAESINSVGP SPLMPPSVSN GEGSSLNTTL  720
DGHDQAAVIG ALLEQMQLDQ HIGSLAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632054.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0E0KHU10.0A0A0E0KHU1_ORYPU; Uncharacterized protein
STRINGOPUNC03G27980.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]