PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G29230.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 244aa    MW: 25250.2 Da    PI: 8.0269
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G29230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer87.31.5e-271262457
      ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      +Y+eC++NhAa+lG++a DGC+Ef+p+   +g++a+l CaACgCHRnFHR++ 
  OPUNC03G29230.1 12 EVYRECMRNHAAKLGTYANDGCCEFTPD---DGHPAGLLCAACGCHRNFHRKDF 62
                     68*************************8...789******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.1E-221361IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-211461IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.1111461IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-221461IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.56E-16119192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-27120192IPR009057Homeodomain-like
TIGRFAMsTIGR015656.5E-27130191IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEQQQQQERP REVYRECMRN HAAKLGTYAN DGCCEFTPDD GHPAGLLCAA CGCHRNFHRK  60
DFLDGRATAA AGVVGGAGVG VGVSPHAPML PSPGGGGPPG YMHMAAMGGA VGGGVVVDGS  120
GGHGGSGGRR RTRTKFTEEQ KARMLRFAER LGWRMPKREP GRAPGDDEVA RFCREIGVNR  180
QVFKVWMHNH KAGGGASGGP GAGGGAQTSS STTRGGGDVG VGLSPAMGGD GEDDEEVRGS  240
EMCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-191291981780ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0915320.0AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630147.11e-112zinc-finger homeodomain protein 11
SwissprotA2XLF41e-113ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-113ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A0E0KIA31e-174A0A0E0KIA3_ORYPU; Uncharacterized protein
STRINGOPUNC03G29230.11e-175(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-35homeobox protein 24