PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G30800.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 167aa    MW: 18960.5 Da    PI: 9.1496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G30800.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.9e-08244754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +rEr+RR+++ ++++ L  ++ ++      K +K +i++ A  YI++L
  OPUNC03G30800.3  2 MRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAIYIHEL 44
                     79*********************8.....6999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.096144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-5150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-5244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.37E-6245No hitNo description
Gene3DG3DSA:4.10.280.101.1E-8263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-11265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MMRERQRREK LSQSYADLYA MVSSRSKGDK NSIVQSAAIY IHELKGARDQ LQRRNEELKA  60
KIMGHDEQQQ CVKVQFEVDE PSSSIDSMIA ALRRLKGMSV KTRGIRSSLS GNRLWTEMNV  120
ETTIAACEVE KAVEEALKEV ERKQPDSDGP FPGSKGWTQT SHVQNVF
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0717340.0AK071734.1 Oryza sativa Japonica Group cDNA clone:J023108N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631231.11e-113transcription factor BHLH148
SwissprotQ75KV91e-114BH148_ORYSJ; Transcription factor BHLH148
TrEMBLA0A0E0KIV11e-121A0A0E0KIV1_ORYPU; Uncharacterized protein
STRINGOBART03G33610.11e-113(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.17e-20bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]