PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G32210.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 260aa    MW: 27433.8 Da    PI: 8.4017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G32210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-0590112123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ CgksFs+   L  H  +H
  OPUNC03G32210.1  90 FKCSVCGKSFSSYQALGGHKTSH 112
                      89**********99998888777 PP
2zf-C2H213.10.00029159181123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C k F++   L  H r+H
  OPUNC03G32210.1 159 HRCSICQKEFPTGQALGGHKRKH 181
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.0390117IPR007087Zinc finger, C2H2
PfamPF139121.1E-1290113IPR007087Zinc finger, C2H2
SMARTSM003550.004690112IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.47E-1090112No hitNo description
Gene3DG3DSA:3.30.160.602.2E-490112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576678.47E-10154181No hitNo description
PfamPF139124.9E-12158183IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078159181IPR007087Zinc finger, C2H2
SMARTSM003550.028159181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSSASSMEAL HAAVLKEEEH QHEVVTSSSA TSGEEGGHLP QGWAKRKRSR RQRSEEENLA  60
LCLLMLARGG HHRVQAPPPL SAPPPAGAEF KCSVCGKSFS SYQALGGHKT SHRVKLPTPP  120
APPVLAPAPV AALLPSAEDR EPATSSTAAS SDGTTNRVHR CSICQKEFPT GQALGGHKRK  180
HYDGGAAAGA SSTELLATVA AESEVGSSGN GHSAARAFDL NLPAVPEFVW RPCSKGKKMW  240
DDEEEVQSPL AFKKPRLLTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0907130.0AC090713.6 Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633313.11e-134zinc finger protein 1
SwissprotQ424301e-117ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0E0KJD60.0A0A0E0KJD6_ORYPU; Uncharacterized protein
STRINGOPUNC03G32210.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.15e-32salt tolerance zinc finger