PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G32220.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 284aa    MW: 31133.7 Da    PI: 6.3934
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G32220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.22e-102102501055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      rrRR+riN ++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  OPUNC03G32220.1 210 RRRRERINGRLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 250
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-14198266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.488200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-12204260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-11206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7210250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-7216254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSQDELLQRP DQVQWTPCHA APAPEEESES EIAAQFFTAP YPCQNDQLDH GEHHELVGIE  60
ACSSVHWQPD RGTCYWPPPL SGDDGGGNSG TGGGGYIGGC FYYVGEPDVP IGLNLLVGDN  120
DGGVLLRNAG PQPKRRTQSD HGGDVGRQKK KARVSDKRNQ ESMQSSSCSD NESNCSQVNR  180
RTVDRIAGGG NGKAPARRGS ATIAQSLYAR RRRERINGRL RILQKLVPNG TKVDISTMLE  240
EAVHYVKFLQ LQIKMLSSDE LWMYAPIAYN GMDLGIDLNI CPPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-122CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631804.11e-156transcription factor BHLH089-like isoform X1
RefseqXP_025879771.11e-156transcription factor BHLH089-like isoform X1
TrEMBLA0A0E0KJD70.0A0A0E0KJD7_ORYPU; Uncharacterized protein
STRINGOPUNC03G32220.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-37bHLH family protein