PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G33340.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 576aa    MW: 62670.1 Da    PI: 7.4693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G33340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH551.5e-17360406455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  OPUNC03G33340.1 360 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYLKSLQ 406
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.72E-18351410No hitNo description
SuperFamilySSF474593.53E-21354420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.635356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-15360406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-22360415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-18362411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MPNPAELASP SPPPPPSPLF PTRQESNRTQ PTGLVPSDDP QVRFAGHPRQ HQQEFIYSPL  60
LLLQPFAASS SKKRRLCRKG CYCWFGSGWE LGGGGGGFLH HFAAYLVGFP SILRCKVVDF  120
SGGAKNRGMD GNARSAANQT KQIVTDNELV ELLWHNGGVV AQPQAAQTRV VSSSGRGQSA  180
SVLTGDETET AAWFPDTLDD ALEKDLYTQL WHSVTGDAFP AAAAGPSSHH PPPPDLPPPA  240
RPPMRSGIGS SWTGDICSTF CGSNHIPETA AQRRDAGATL PPERPRGAST HDGAGTSSSG  300
GSGSNFGGSG LPSESASAHK RKGREDSDSR SEDAECEATE ETKSSSRRYG SKRRTRAAEV  360
HNLSERRRRD RINEKMRALQ ELIPHCNKTD KASILDEAIE YLKSLQMQVQ IMWMTTGMAP  420
MMFPGAHQFM PPMAVGMNSA CIPAAQGLSQ MSRLPYMNHS MPNHIPLNSP PAMNPMNVAN  480
QMQNIQLREA SNPFLHPDGW QTVPPQVSGP YAASRPQVAQ QNQIPKDKEF NQQQEQQLGE  540
PEDYVWEPYH HCKLPSSQQK PEGYYMVLPA HAVGGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351368KRRTRAAEVHNLSERRRR
2364369ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056370.0AK105637.1 Oryza sativa Japonica Group cDNA clone:001-200-E02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633319.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015633322.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
SwissprotQ10CH50.0PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBLA0A0E0KJS10.0A0A0E0KJS1_ORYPU; Uncharacterized protein
STRINGOPUNC03G33340.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-31phytochrome interacting factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  3. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  4. Todaka D, et al.
    Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52
    [PMID:22984180]