PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G33340.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 573aa MW: 62558.3 Da PI: 8.3597

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G33340.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55	1.5e-17	357	403	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq OPUNC03G33340.2 357 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYLKSLQ 403 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.67E-18	348	407	No hit	No description
SuperFamily	SSF47459	3.53E-21	351	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.635	353	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-15	357	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-22	357	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-18	359	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MYPFLQIQVA NSEGRHISHS KEIRQRCPTQ QSLHLPLLLL LHLHYFPPGK NPTGRSPRAL 60 FLLTTRKYAL RDTRGSISKS SYTRLCCCCS LSLPAAARRG DFAGRVATVG LVQVVDFSGG 120 AKNRGMDGNA RSAANQTKQI VTDNELVELL WHNGGVVAQP QAAQTRVVSS SGRGQSASVL 180 TGDETETAAW FPDTLDDALE KDLYTQLWHS VTGDAFPAAA AGPSSHHPPP PDLPPPARPP 240 MRSGIGSSWT GDICSTFCGS NHIPETAAQR RDAGATLPPE RPRGASTHDG AGTSSSGGSG 300 SNFGGSGLPS ESASAHKRKG REDSDSRSED AECEATEETK SSSRRYGSKR RTRAAEVHNL 360 SERRRRDRIN EKMRALQELI PHCNKTDKAS ILDEAIEYLK SLQMQVQIMW MTTGMAPMMF 420 PGAHQFMPPM AVGMNSACIP AAQGLSQMSR LPYMNHSMPN HIPLNSPPAM NPMNVANQMQ 480 NIQLREASNP FLHPDGWQTV PPQVSGPYAA SRPQVAQQNQ IPKDKEFNQQ QEQQLGEPED 540 YVWEPYHHCK LPSSQQKPEG YYMVLPAHAV GGP

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MYPFLQIQVA NSEGRHISHS KEIRQRCPTQ QSLHLPLLLL LHLHYFPPGK NPTGRSPRAL  60
FLLTTRKYAL RDTRGSISKS SYTRLCCCCS LSLPAAARRG DFAGRVATVG LVQVVDFSGG  120
AKNRGMDGNA RSAANQTKQI VTDNELVELL WHNGGVVAQP QAAQTRVVSS SGRGQSASVL  180
TGDETETAAW FPDTLDDALE KDLYTQLWHS VTGDAFPAAA AGPSSHHPPP PDLPPPARPP  240
MRSGIGSSWT GDICSTFCGS NHIPETAAQR RDAGATLPPE RPRGASTHDG AGTSSSGGSG  300
SNFGGSGLPS ESASAHKRKG REDSDSRSED AECEATEETK SSSRRYGSKR RTRAAEVHNL  360
SERRRRDRIN EKMRALQELI PHCNKTDKAS ILDEAIEYLK SLQMQVQIMW MTTGMAPMMF  420
PGAHQFMPPM AVGMNSACIP AAQGLSQMSR LPYMNHSMPN HIPLNSPPAM NPMNVANQMQ  480
NIQLREASNP FLHPDGWQTV PPQVSGPYAA SRPQVAQQNQ IPKDKEFNQQ QEQQLGEPED  540
YVWEPYHHCK LPSSQQKPEG YYMVLPAHAV GGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	348	365	KRRTRAAEVHNLSERRRR
2	361	366	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105637	0.0	AK105637.1 Oryza sativa Japonica Group cDNA clone:001-200-E02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633322.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
Swissprot	Q10CH5	0.0	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A0E0KJS2	0.0	A0A0E0KJS2_ORYPU; Uncharacterized protein
STRING	OPUNC03G33340.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.1	3e-31	phytochrome interacting factor 3-like 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]