PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G33340.3

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 446aa MW: 48555.1 Da PI: 6.1943

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G33340.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.4	1.1e-17	221	267	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq OPUNC03G33340.3 221 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYLKSLQ 267 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.35E-18	212	271	No hit	No description
SuperFamily	SSF47459	4.58E-20	215	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.635	217	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-15	221	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-21	221	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-18	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MAICSTDNEL VELLWHNGGV VAQPQAAQTR VVSSSGRGQS ASVLTGDETE TAAWFPDTLD 60 DALEKDLYTQ LWHSVTGDAF PAAAAGPSSH HPPPPDLPPP ARPPMRSGIG SSWTGDICST 120 FCGSNHIPET AAQRRDAGAT LPPERPRGAS THDGAGTSSS GGSGSNFGGS GLPSESASAH 180 KRKGREDSDS RSEDAECEAT EETKSSSRRY GSKRRTRAAE VHNLSERRRR DRINEKMRAL 240 QELIPHCNKT DKASILDEAI EYLKSLQMQV QIEIVESVPQ IMWMTTGMAP MMFPGAHQFM 300 PPMAVGMNSA CIPAAQGLSQ MSRLPYMNHS MPNHIPLNSP PAMNPMNVAN QMQNIQLREA 360 SNPFLHPDGW QTVPPQVSGP YAASRPQVAQ QNQIPKDKEF NQQQEQQLGE PEDYVWEPYH 420 HCKLPSSQQK PEGYYMVLPA HAVGGP

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MAICSTDNEL VELLWHNGGV VAQPQAAQTR VVSSSGRGQS ASVLTGDETE TAAWFPDTLD  60
DALEKDLYTQ LWHSVTGDAF PAAAAGPSSH HPPPPDLPPP ARPPMRSGIG SSWTGDICST  120
FCGSNHIPET AAQRRDAGAT LPPERPRGAS THDGAGTSSS GGSGSNFGGS GLPSESASAH  180
KRKGREDSDS RSEDAECEAT EETKSSSRRY GSKRRTRAAE VHNLSERRRR DRINEKMRAL  240
QELIPHCNKT DKASILDEAI EYLKSLQMQV QIEIVESVPQ IMWMTTGMAP MMFPGAHQFM  300
PPMAVGMNSA CIPAAQGLSQ MSRLPYMNHS MPNHIPLNSP PAMNPMNVAN QMQNIQLREA  360
SNPFLHPDGW QTVPPQVSGP YAASRPQVAQ QNQIPKDKEF NQQQEQQLGE PEDYVWEPYH  420
HCKLPSSQQK PEGYYMVLPA HAVGGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	229	KRRTRAAEVHNLSERRRR
2	225	230	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105637	0.0	AK105637.1 Oryza sativa Japonica Group cDNA clone:001-200-E02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633325.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X5
Swissprot	Q10CH5	0.0	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A0E0KJS3	0.0	A0A0E0KJS3_ORYPU; Uncharacterized protein
STRING	OPUNC03G33340.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	5e-29	phytochrome interacting factor 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]