PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G33890.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 177aa MW: 19062.3 Da PI: 8.3036

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G33890.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.1	5.2e-37	20	120	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C++dCvlap+fpa++p+++a+v+++FGa n ++l++lp +er +a++s++ eA r++dPvyG++gvi++lq q++ ++ el OPUNC03G33890.1 20 RCAACKFLRRRCSRDCVLAPHFPASDPHRYACVQRVFGAGNTARMLQQLPVHERGRAADSMAAEAYRRVQDPVYGCAGVINRLQDQIRAAQCEL 113 6******************************************************************************************* PP DUF260 95 allkeel 101 a +++++ OPUNC03G33890.1 114 AWTHAQI 120 99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.734	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-35	20	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MSPGEDDVEA SNSGASAIRR CAACKFLRRR CSRDCVLAPH FPASDPHRYA CVQRVFGAGN 60 TARMLQQLPV HERGRAADSM AAEAYRRVQD PVYGCAGVIN RLQDQIRAAQ CELAWTHAQI 120 AMHSAAAAHA RTMTPPRTTH PPGQRDGGGV AGAPSTQQGT TSAAWQLEDF ASEFSFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-32	21	124	12	115	LOB family transfactor Ramosa2.1
5ly0_B	9e-32	21	124	12	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC087096	1e-102	AC087096.11 Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence.
GenBank	AP014959	1e-102	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-102	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015690105.1	7e-67	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	1e-40	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A0E0KJZ4	1e-127	A0A0E0KJZ4_ORYPU; Uncharacterized protein
STRING	OPUNC03G33890.1	1e-128	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	4e-40	LOB domain-containing protein 24