PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G34870.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 262aa    MW: 27790.6 Da    PI: 7.079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G34870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11143190455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  OPUNC03G34870.1 143 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 190
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.37E-10137194No hitNo description
SuperFamilySSF474594.32E-18137206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-18139207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8143190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDPSPTLAAE LWRPPHLGGG GGGGGGGRGL EAAASGVTEQ SNGSRGGGGG RRRQREAPAP  60
EDDSSRIVST SGGGGAGGQD LTDSEAKRFK ASKSSGDNGS LRTEAETDSR NASKSADQNP  120
PPPEPPKQDY IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN KVIGKASVLD  180
EIINYIQALQ RQVEFLSMKL EAVNAHVNNG IEAFPSKDFG AQVYNTAPGL TFDPQTPREY  240
AQGSTPSEWL HMQIGGTYER VT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001770.0AK100177.1 Oryza sativa Japonica Group cDNA clone:J023029J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629323.11e-149transcription factor BHLH089-like
SwissprotQ84T081e-150BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A0E0KKC30.0A0A0E0KKC3_ORYPU; Uncharacterized protein
STRINGOPUNC03G34870.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-70BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]