PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G35590.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 257aa    MW: 27019.6 Da    PI: 5.7837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G35590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.3e-057497326
                     HHHHHHHHHHHHHHHHHHHHHHCT CS
              HLH  3 rahnerErrRRdriNsafeeLrel 26
                     r+h e+E+rRR+ri+s +++Lr +
  OPUNC03G35590.1 74 RNHREAEKRRRERIKSHLDRLRAI 97
                     78*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-774119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MFPVEVAAAG AGRTMQGEAV VPMMLPPFFM DSGIWPAAAA AAAAAAGVVD VAASAEDEAA  60
AATAAQDRAL AASRNHREAE KRRRERIKSH LDRLRAIDKA SLLAKAVERV RDLKQRMAGI  120
GEAAPAHLFP TEHDEIVVLA SGGGGAASVF EASVCCDDRS DLLPELIETL RALRLRTLRA  180
EMATLGGRVR NVLVLARDAG EGGEGDDDRA DYSAGSNDGG DFLKEALRAL VERPGAAAGD  240
RPKRRRVVSD MNMQAAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242246KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690123.12e-90PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-41BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0E0KKL11e-178A0A0E0KKL1_ORYPU; Uncharacterized protein
STRINGOPUNC03G35590.11e-179(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.16e-14bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]