PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G36150.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 326aa    MW: 34677.2 Da    PI: 9.2555
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G36150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011105127123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F     L  H+r+H
  OPUNC03G36150.1 105 HECHICGLGFEMGQALGGHMRRH 127
                      79********************9 PP
2zf-C2H2130.0003282304123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ F     L  H+r+H
  OPUNC03G36150.1 282 HECHICGQGFEMGQALGGHMRRH 304
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.58E-54776No hitNo description
PROSITE profilePS501579.6815178IPR007087Zinc finger, C2H2
PfamPF139125.1E-105175IPR007087Zinc finger, C2H2
SMARTSM003550.585173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
PfamPF139123.6E-10105130IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827105132IPR007087Zinc finger, C2H2
SuperFamilySSF576671.87E-7105127No hitNo description
SMARTSM003550.49105127IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576671.87E-7221248No hitNo description
PfamPF139122.7E-10226250IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681226253IPR007087Zinc finger, C2H2
SMARTSM003550.51226248IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280228248IPR007087Zinc finger, C2H2
SuperFamilySSF576679.56E-6281308No hitNo description
PfamPF139124.7E-10282307IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.512282309IPR007087Zinc finger, C2H2
SMARTSM003550.23282304IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKHPRGQEEE VSLALALSTD SSTASDSSAP APARKRARRR SVVATSGEGE FVCKTCSRAF  60
PTFQALGGHR TSHLRGRNNG LDLGAVADKA IRLHRAADKE HRDKHECHIC GLGFEMGQAL  120
GGHMRRHREE MAAGGGGSSA DDWVWRCDAR PEEIAGRAAE PPVLLELFAY SFVFLLTMTK  180
HPRDGEVISL SLSLKLGAAA DGADGGDGRK KPRRGSSPAA SGSGEFVCKT CSRAFPSFQA  240
LGGHRTSHLR GRHGLALGLA ATTAKEHAAV TKKLQEKPPA SHECHICGQG FEMGQALGGH  300
MRRHREEAAA AAAAVHAPPV LLELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044330.0AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBankAK0688610.0AK068861.1 Oryza sativa Japonica Group cDNA clone:J013170H07, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY2864740.0AY286474.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP182 mRNA, complete cds.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8293160.0CT829316.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI011O15, full insert sequence.
GenBankCT8293170.0CT829317.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI016A02, full insert sequence.
GenBankCT8293180.0CT829318.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI021E01, full insert sequence.
GenBankHQ8588360.0HQ858836.1 Oryza sativa Japonica Group isolate UT1346 C2H2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629244.11e-87zinc finger protein ZAT12
TrEMBLA0A0E0KKT30.0A0A0E0KKT3_ORYPU; Uncharacterized protein
STRINGOPUNC03G36150.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.15e-19C2H2 family protein