PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G36900.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 208aa    MW: 22719.7 Da    PI: 8.6079
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G36900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.72.1e-20100134135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+ C+ttkTplWR gp+g+k+LCnaCG++yrkk++
  OPUNC03G36900.1 100 CTDCHTTKTPLWRGGPSGPKSLCNACGIRYRKKRR 134
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.42E-1493133No hitNo description
PROSITE profilePS5011413.3194130IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-1894153IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-1698134IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.83E-1599134No hitNo description
PfamPF003204.0E-18100134IPR000679Zinc finger, GATA-type
PROSITE patternPS003440100125IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDCHRRRLVR PADPWGGDLP ADRAAAAAEH QPPAAWCAGA VERRVSGGGV WEEEEEEGSA  60
ASGVLDPPIL APEMDSSSVE KGSGSIDPDE RTASGEPKAC TDCHTTKTPL WRGGPSGPKS  120
LCNACGIRYR KKRREALGLD AGEGAERQEK KKSKRERGEE VTMELRMVGF GKEVVLKQRR  180
RMRRRRRLGE EEKAAILLMA LSSGVIYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183QRRRMRR
2179184RRMRRR
3179186RRMRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0737090.0AK073709.1 Oryza sativa Japonica Group cDNA clone:J033058P14, full insert sequence.
GenBankCT8319410.0CT831941.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631979.12e-81GATA transcription factor 16
TrEMBLA0A0E0KL241e-146A0A0E0KL24_ORYPU; Uncharacterized protein
STRINGOPUNC03G36900.11e-146(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-26GATA transcription factor 15