PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G36910.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 199aa    MW: 21558.4 Da    PI: 8.2088
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G36910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.82e-2091125135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+ C+ttkTplWR gp+g+k+LCnaCG++yrkk++
  OPUNC03G36910.1  91 CTDCHTTKTPLWRGGPSGPKSLCNACGIRYRKKRR 125
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.09E-1484124No hitNo description
PROSITE profilePS5011413.3185121IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-1885144IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-1689125IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.41E-1590125No hitNo description
PROSITE patternPS00344091116IPR000679Zinc finger, GATA-type
PfamPF003203.8E-1891125IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVTNPWGGDL PADRAAAAAE HQPPAAWCAG AVERRVSGGG VWEEEEEEGS AASGVLDPPI  60
LAPEMDSSSV EKGSGSIDPD ERTASGEPKA CTDCHTTKTP LWRGGPSGPK SLCNACGIRY  120
RKKRREALGL DAGEGAERQE KKKSKRERGE EVTMELRMVG FGKEVVLKQR RRMRRRRRLG  180
EEEKAAILLM ALSSGVIYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174QRRRMRR
2170175RRMRRR
3170177RRMRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0737090.0AK073709.1 Oryza sativa Japonica Group cDNA clone:J033058P14, full insert sequence.
GenBankCT8319410.0CT831941.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631979.19e-82GATA transcription factor 16
TrEMBLA0A0E0KL251e-139A0A0E0KL25_ORYPU; Uncharacterized protein
STRINGOPUNC03G36910.11e-140(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-26GATA transcription factor 15