PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G38540.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 115aa    MW: 12358.1 Da    PI: 4.0985
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G38540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-09348345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +W++ E  ++ +a + + ++   +W++Ia+ +g g+t+ +++ ++ 
  OPUNC03G38540.1  3 SWSESENARFEQALATYDSDtpnRWELIAAAVGGGKTADDIRRHYD 48
                     6*******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-6153IPR001005SANT/Myb domain
PROSITE profilePS512949.13155IPR017930Myb domain
SuperFamilySSF466892.24E-11358IPR009057Homeodomain-like
CDDcd001674.35E-8351No hitNo description
PfamPF002495.1E-8348IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-5349IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MASWSESENA RFEQALATYD SDTPNRWELI AAAVGGGKTA DDIRRHYDEL KDDVSSIDSQ  60
GHHADALPNG NNAAGATNNN TLALSQLEGN FSTNGNYIDE VKEIEVDPTS TSSRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286472e-69AC128647.8 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBb0062G19, complete sequence.
GenBankAP0149592e-69AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-69CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879511.16e-31protein RADIALIS-like 3
TrEMBLA0A0E0KLQ71e-78A0A0E0KLQ7_ORYPU; Uncharacterized protein
STRINGOPUNC03G38540.12e-79(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-19RAD-like 1