PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G00270.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 820aa    MW: 88819.7 Da    PI: 5.1568
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G00270.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33.1e-095485127
                     --S---SGGGGTS.....--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartG.....tCkyGdrCkFaHgp 27
                     +kt+lC+ff+r G      C++Gd+C++aH++
  OPUNC04G00270.3 54 WKTSLCSFFRRRGasstdGCSHGDSCRYAHSE 85
                     8*****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.5E-134991IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.55E-65190IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-45385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3385386IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-75485IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3301.9E-5124172IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168744.525216820IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.27E-48218244IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.27E-48276379IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.27E-48438565IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.2E-62461565IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.4E-9510567IPR025714Methyltransferase domain
CDDcd024403.42E-7511565No hitNo description
Gene3DG3DSA:3.40.50.1501.2E-62703760IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.27E-48708820IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059589.4E-7713756IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300716748IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.2E-62795820IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MEMEMEDKKA PSPPPMESDV AGEKRKREDD ASSSAALVGE DAAANNSGAQ HPMWKTSLCS  60
FFRRRGASST DGCSHGDSCR YAHSEEELRP RPDGTWDPTS DRAKKLRKVA AEEVDEEVGI  120
SYATAKKKKG MTVGFVTFEN IEQLKNAIEV LTENQSGGKE IKIADANRRS HQKLHTEKPV  180
SDNGVATENG TSVDIPPGKT SAPEAAISSK KSVRDAVTPL AHMSYNDQLE HKKNSVAQIL  240
KRLTRNARKA CPTGIPLPDW VFKSKEIGGL PCKLEGILES PVINGYRNKC EFSVGFSLEG  300
KKTVGFMLGN FREGVTAVEE PVDCPNVSEI SCKYALMFQD YLQSSSLPVW NRIDNCGFWR  360
QFTVREGRCS AQAVAQNAET EISEVMLIVQ VCSTGVDDAL TKDEFDKLTV ALQQGAATCS  420
PPLPLTTIVV QDHKGISNAA PADCPLIPLL VPKVDQSEGT VDKTRIHDHI GNLRFSISPT  480
AFFQVNTLAA ERLYTLAGDW ANLNLGTLLF DVCCGTGTIG LTLAHRVGMV VGIEMNESAV  540
SDAQRNALIN GVTNCRFVCG KAEDVMGSLL TEYLGSPQHD IPVSEGAVSG TVKDEEVIDG  600
SKNSGENLDS SMQKNDNGES QQLGGASADS SSTIDEIKGN SNDRLGNGLE GSHDEYNEVA  660
GEDIHGEASL INESVDLKVS DCLEDSKTSH DGSSISNNDV TAATACQFED IVAIVDPPRV  720
GLHPTVIKAL RTHPRIRRLV YISCNPDSLV ANAIELCTPS SEKQEKNKGN RGWRTMSSAG  780
LARQRTKSMP NSEPFVPKRA MAVDLFPHTS HCEMVMLFER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A1e-16475572274371Uncharacterized RNA methyltransferase SP_1029
5xj2_A1e-16475572274371Uncharacterized RNA methyltransferase SP_1029
5xj2_B1e-16475572274371Uncharacterized RNA methyltransferase SP_1029
5xj2_C1e-16475572274371Uncharacterized RNA methyltransferase SP_1029
5xj2_D1e-16475572274371Uncharacterized RNA methyltransferase SP_1029
5zq0_A1e-16475572275372Uncharacterized RNA methyltransferase SP_1029
5zq1_A1e-16475572274371Uncharacterized RNA methyltransferase SP_1029
5zq8_A1e-16475572274371Uncharacterized RNA methyltransferase SP_1029
5zq8_B1e-16475572274371Uncharacterized RNA methyltransferase SP_1029
5zth_A1e-16475572275372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201560.0AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636996.10.0zinc finger CCCH domain-containing protein 24 isoform X1
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0E0KM190.0A0A0E0KM19_ORYPU; Uncharacterized protein
STRINGOGLUM04G00160.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]