PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G00710.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 472aa    MW: 51376.7 Da    PI: 4.7836
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G00710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.73e-26201266171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kf++lle +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn irwkg
  OPUNC04G00710.1 201 RYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKTLKNMIRWKG 266
                      6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012171.7E-9113No hitNo description
PRINTSPR012171.7E-91334No hitNo description
PRINTSPR012171.7E-93551No hitNo description
PRINTSPR012171.7E-96893No hitNo description
Gene3DG3DSA:1.10.10.105.7E-28198267IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-16201264IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.7E-34201266IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.2E-23203266IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.30E-35277390No hitNo description
SuperFamilySSF1440743.14E-25278389No hitNo description
PfamPF164212.7E-24282387IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDGSTTIPLP QPPRPPPPAP APAPPQVFLR RSVLPPPQTG PHRVAPAPPP PGAHVHYFRA  60
ASPIPIFRAA ASSRPPRPPP TTAPAPPPPP AAPAVTPARP VAVAPPPPPA TTTATATEEV  120
AAPATGNPMA NTADNEEKNE REAVQSEVPK GETVQGPDKE CTTGTVKGIK RPRKPKGFKK  180
GSLRSNEGDA GASLFSPNNC RYDSSLGLLT KKFINLLEGA EDGTLDLNKA AETLEVQKRR  240
IYDITNVLEG VDLIEKTLKN MIRWKGFDMS KPKERERQIS ALKEEIESLY DEESRLDDEI  300
MEAQEKLNAL RVDEDRRKLL YVSKEDINAI PRFQGSTLIA VNAPRGTYIE VPDPNLDMDI  360
YKDLDNQEKH YQIVFRSAMG PVDCFLISNH QETFNADQQM ADDLDAAVTS GSSQALQQMD  420
YVQAPEIGES NGVREHTSEP SKRDDPVPGI VKIVPSDDDI AADYWLSSDA DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-19201266773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066121e-103AL606612.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0021I10, complete sequence.
GenBankAL6066161e-103AL606616.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060M15, complete sequence.
GenBankAP0149601e-103AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633977.10.0transcription factor E2FC
TrEMBLA0A0E0KM680.0A0A0E0KM68_ORYPU; Uncharacterized protein
STRINGOPUNC04G00710.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.37e-81E2F transcription factor 1