PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G00710.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

E2F/DP

Protein Properties

Length: 461aa MW: 50172.4 Da PI: 4.682

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G00710.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	82.8	2.9e-26	190	255	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++lle +e+g+++ln++a++L +v ++RRiYDi+NVLe+++liek+ kn irwkg OPUNC04G00710.2 190 RYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKTLKNMIRWKG 255 6899****************************...99..**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR01217	1.6E-9	1	13	No hit	No description
PRINTS	PR01217	1.6E-9	13	34	No hit	No description
PRINTS	PR01217	1.6E-9	35	51	No hit	No description
PRINTS	PR01217	1.6E-9	68	93	No hit	No description
Gene3D	G3DSA:1.10.10.10	5.5E-28	187	256	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.63E-16	190	253	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	7.7E-34	190	255	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Pfam	PF02319	1.2E-23	192	255	IPR003316	E2F/DP family, winged-helix DNA-binding domain
CDD	cd14660	1.74E-35	266	379	No hit	No description
SuperFamily	SSF144074	2.88E-25	267	378	No hit	No description
Pfam	PF16421	2.6E-24	271	376	IPR032198	E2F transcription factor, CC-MB domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000902	Biological Process	cell morphogenesis
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042023	Biological Process	DNA endoreduplication
GO:0051782	Biological Process	negative regulation of cell division
GO:0005667	Cellular Component	transcription factor complex
GO:0005730	Cellular Component	nucleolus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MDGSTTIPLP QPPRPPPPAP APAPPQVFLR RSVLPPPQTG PHRVAPAPPP PGAHVHYFRA 60 ASPIPIFRAA ASSRPPRPPP TTAPAPPPPP AAPAVTPARP VAVAPPPPPA TTTATATEEV 120 AAPATGNPMA NTADNEEKNE REAVQSEVPK GETVQGPDKE CTTGTVKGIK RPRKPKGDAG 180 ASLFSPNNCR YDSSLGLLTK KFINLLEGAE DGTLDLNKAA ETLEVQKRRI YDITNVLEGV 240 DLIEKTLKNM IRWKGFDMSK PKERERQISA LKEEIESLYD EESRLDDEIM EAQEKLNALR 300 VDEDRRKLLY VSKEDINAIP RFQGSTLIAV NAPRGTYIEV PDPNLDMDIY KDLDNQEKHY 360 QIVFRSAMGP VDCFLISNHQ ETFNADQQMA DDLDAAVTSG SSQALQQMDY VQAPEIGESN 420 GVREHTSEPS KRDDPVPGIV KIVPSDDDIA ADYWLSSDAD S

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MDGSTTIPLP QPPRPPPPAP APAPPQVFLR RSVLPPPQTG PHRVAPAPPP PGAHVHYFRA  60
ASPIPIFRAA ASSRPPRPPP TTAPAPPPPP AAPAVTPARP VAVAPPPPPA TTTATATEEV  120
AAPATGNPMA NTADNEEKNE REAVQSEVPK GETVQGPDKE CTTGTVKGIK RPRKPKGDAG  180
ASLFSPNNCR YDSSLGLLTK KFINLLEGAE DGTLDLNKAA ETLEVQKRRI YDITNVLEGV  240
DLIEKTLKNM IRWKGFDMSK PKERERQISA LKEEIESLYD EESRLDDEIM EAQEKLNALR  300
VDEDRRKLLY VSKEDINAIP RFQGSTLIAV NAPRGTYIEV PDPNLDMDIY KDLDNQEKHY  360
QIVFRSAMGP VDCFLISNHQ ETFNADQQMA DDLDAAVTSG SSQALQQMDY VQAPEIGESN  420
GVREHTSEPS KRDDPVPGIV KIVPSDDDIA ADYWLSSDAD S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1cf7_A	8e-20	190	255	7	73	PROTEIN (TRANSCRIPTION FACTOR E2F-4)
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269\|PubMed:11669580, ECO:0000269\|PubMed:11786543, ECO:0000269\|PubMed:11862494, ECO:0000269\|PubMed:11891240, ECO:0000269\|PubMed:12913157, ECO:0000269\|PubMed:16055635, ECO:0000269\|PubMed:16514015}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269\|PubMed:16055635, ECO:0000269\|PubMed:16514015, ECO:0000269\|PubMed:18424613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606612	1e-103	AL606612.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0021I10, complete sequence.
GenBank	AL606616	1e-103	AL606616.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060M15, complete sequence.
GenBank	AP014960	1e-103	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633977.1	0.0	transcription factor E2FC
Swissprot	Q9FV71	6e-79	E2FB_ARATH; Transcription factor E2FB
TrEMBL	A0A0E0KM69	0.0	A0A0E0KM69_ORYPU; Uncharacterized protein
STRING	OPUNC04G00710.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.3	7e-80	E2F transcription factor 1

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wu M,Liu L,Hijazi H,Chan C A multi-layer inference approach to reconstruct condition-specific genes and their regulation. Bioinformatics, 2013. 29(12): p. 1541-52 [PMID:23610368] Kobayashi K, et al. Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 2015. 34(15): p. 1992-2007 [PMID:26069325]