PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G00930.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 681aa    MW: 75247.4 Da    PI: 7.1242
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G00930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06991111426
                      --TTTTT-SS-SS CS
          zf-CCCH  14 tCkyGdrCkFaHg 26 
                       CkyGd+C+F+H+
  OPUNC04G00930.1  99 SCKYGDSCRFSHD 111
                      7***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.5382113IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.981126151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.708.5E-75325568IPR013785Aldolase-type TIM barrel
SuperFamilySSF513952.99E-65329640No hitNo description
CDDcd028016.58E-96329564No hitNo description
PfamPF012074.1E-54332566IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360413431IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002943Biological ProcesstRNA dihydrouridine synthesis
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAAAAAADPP DSSPAATAAS SPPRPSPEEL VARAVAPVKP AFLRPPPVRD APKDESKANG  60
GAVVAEKKSK RQLKRERKQE QKSSSHLCIE VGKSGNASSC KYGDSCRFSH DIDAYLAQKP  120
ADLEGMCPFA TVDQLCPYGL TCRFLGTHKD THAASGNLSE KHEINTLNKD IQKLLWKNKY  180
KFPKASAQIK LLGLKEVIKS KPNAANDDKK VNHDNLDGNG DEKTEPLCNP LINAECDSTL  240
CEELDRSEGE PLIDNSIPCV EPRPTKKSKV ESDEIDKHGA GTLNAKAESE DPNLSNGLEV  300
PSNNASSCRT DLIATPHLRE KKIIDFREKL YLAPLTTVGN LPFRRLCKTL GADITCGEMA  360
MCTNLLQGQA SEWALLRRHS SEDLFGVQIC GAYPDTVART VELVDNECSV DFIDINMGCP  420
IDIVVNKGAG SSLLTKPMRI KSIVQAASTV TEKPLTVKVR TAFFEGRNRA DSIVSDIYDW  480
GASAITVHGR SRQQRYSKLA DWDYIYQCAQ KAPNQLHVVG NGDVFSFTDW NKHVSGCSKI  540
STCMIARGAL IKPWIFTEIK EQRHWDITSG ERFNILKDFV SFGLEHWGSD SKGVETTRYF  600
LLEWLSYTCR YIPVGLLDVI PQRLNWRPPS YCGRDDLETL MISDSAADWI RISEMLLGKV  660
PEGFTFIPKH KSNAYDRAEN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A8e-2832656027257tRNA-dihydrouridine synthase B
6ei9_B8e-2832656027257tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116990.0AK111699.1 Oryza sativa Japonica Group cDNA clone:J023009K15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635918.10.0LOW QUALITY PROTEIN: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A0E0KM920.0A0A0E0KM92_ORYPU; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGOPUNC04G00930.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103222527
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]