PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G02200.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 387aa    MW: 40158.9 Da    PI: 6.8139
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G02200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.3e-07223245123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cgk F+r  nL+ H+r H
  OPUNC04G02200.1 223 HYCQVCGKGFKRDANLRMHMRAH 245
                      68*******************99 PP
2zf-C2H212.80.00035310333123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C+ Cg k F   s+L++H + +
  OPUNC04G02200.1 310 YVCGRCGgKQFAVLSDLRTHEKHC 333
                      9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.61E-6222248No hitNo description
PROSITE profilePS5015712.653223250IPR007087Zinc finger, C2H2
SMARTSM003550.0034223245IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-6223249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280225245IPR007087Zinc finger, C2H2
SMARTSM00355110272305IPR015880Zinc finger, C2H2-like
SMARTSM0035530310332IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSWLGEEEDV KKEEEEEEGG VEQEMLLLSH GGGVAAPAAV AAADDVLAYH VAVLRDKVQQ  60
LEPLVGMVVS PAAHGQLRRD AAAMAASSAC SVLQEITAAA SAVAHRLEQA GGGASFRRGA  120
AFADDGHAAG EQMFAAAAHG GGGGGGGGGE GGDEADASRF HHGPVAPTVL GGGAIATHAA  180
TGRISASAMA SSSGRGAGGG EDDDDDVDVV ELEASYLLAR YTHYCQVCGK GFKRDANLRM  240
HMRAHGDEYK TSAALSNPSG SGAGAAMKAK CYSCPAEGCR WNRRHPRFQA LKSVVCAKNH  300
YRRSHCPKMY VCGRCGGKQF AVLSDLRTHE KHCGELRWLC SCGTFFSRKD KLMGHVALFA  360
TGHAPVPVAA AAPEASPSTT TTERSRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL4421130.0AL442113.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0806H05, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCT8379280.0CT837928.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635006.11e-156protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0E0KMN20.0A0A0E0KMN2_ORYPU; Uncharacterized protein
STRINGOPUNC04G02200.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.14e-75C2H2 family protein