PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G05620.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 294aa    MW: 31339.7 Da    PI: 5.1865
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G05620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.4e-13104149555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + ++Er RR+r+N++++ Lr ++Pk      +K++Ka+i++ A+ +I +Lq
  OPUNC04G05620.1 104 NIAMERDRRKRLNEKLFALRAVVPKI-----TKMDKASIVRDAIAHIEKLQ 149
                      5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.88899148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.34E-14103153No hitNo description
PfamPF000108.8E-11104149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15104167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-14105165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEAAAEMGVL LDLYWHTPHF LDLAVADSLL MDSFGGGSMY VTAPAAPPQP VMEEKEYDDS  60
LSELYAYSQS RYDDSSSPDV VNSCSTAAAA AVTATAVAAS SNKNIAMERD RRKRLNEKLF  120
ALRAVVPKIT KMDKASIVRD AIAHIEKLQE EERQLLGEIS VLQSAVAITT TAGATTVEDN  180
SGGVAMPRMK KLRSTPPLDD GGGTLHSAAS PPFQLLQVSK VGETTMMVSI RCAKTRGAMA  240
KVCHAVESLH LTVVSASIAA VDGSIVHTMF VETEEMSGAS EMKQRIQSSL LSSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633867.11e-143transcription factor bHLH35
TrEMBLA0A0E0KNS80.0A0A0E0KNS8_ORYPU; Uncharacterized protein
STRINGOPUNC04G05620.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-38bHLH family protein