PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G05630.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 305aa    MW: 32679.9 Da    PI: 4.6503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G05630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-1386131555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + ++Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI+ Lq
  OPUNC04G05630.1  86 NIIMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQRLQ 131
                      5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.75881130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.63E-1485135No hitNo description
PfamPF000101.1E-1086131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-1786154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-1687136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1787147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.95E-5225285No hitNo description
CDDcd048730.00256227293No hitNo description
PROSITE profilePS516718.535228304IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDAEMAMGES FAYYWETQRY LESEELDSIY LPTQDDSNYE SSSPDGSHSS SATAAAMGGD  60
AAAAGGGGGG MMMMMDGGDA GGANKNIIME RDRRRKLNEK LYALRSVVPN ITKMDKASII  120
KDAIEYIQRL QAEEQQMLRE VSALESAAAA NAPTTNPFDL VGGGGCADEG YEYGHGHGEA  180
AQRTKKVKRA LSVSSINDAL LAATTTAAAP PVEIQELRVS EVGDRVLVVS VTCSKRRDAM  240
ARVCRALEEL RLRVITANIT SVAGCLMHTI FVEVDHMDSV QMKQMVEAAL SQLVATGSPL  300
SSMSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0407441e-167AB040744.1 Oryza sativa RERJ1 mRNA for Transcription Factor, complete cds.
GenBankAK2422101e-167AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634154.11e-140transcription factor bHLH35
TrEMBLA0A0E0KNS90.0A0A0E0KNS9_ORYPU; Uncharacterized protein
STRINGOPUNC04G05630.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-47bHLH family protein