PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G07110.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 391aa MW: 40677.6 Da PI: 6.6023

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G07110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	4.8e-10	233	280	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq OPUNC04G07110.1 233 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 280 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.07E-17	227	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.25E-11	227	284	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-16	229	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.612	229	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-7	233	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	235	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MADEHFFPAG DYFSSSGAAP GTGAAMMMPP WAVADQMMMM VPAPAAAAAE SVAHFDSALS 60 SLVSSPQGDE MAAIGDLIGR LGCICGNNGA SANNSCYSTP LSSPPRAFRG GYAAVDTGGG 120 RLSRVSSSKS LGAAALESSE AEMSPTTAAG DQPAKPSAAA AAAAARKRKS SAKPKASSSS 180 LPTATAATNA SPKRSKVAGD GDSATAAAEE EEKPEPAKDY IHVRARRGQA TDSHSLAERV 240 RRERISERMK LLQSLVPGCN KITGKALMLD EIINYVQSLQ RQVEFLSMKL ATMNPQLDSD 300 SYYMPSKDMS HMPILAYPSG DPTTTTAFSY TGSPATADPF TAYNYWDLDL HTAIQMGVAA 360 TTGLSQDGPV TTMAPSPSPL SHHPPHGFYG K

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MADEHFFPAG DYFSSSGAAP GTGAAMMMPP WAVADQMMMM VPAPAAAAAE SVAHFDSALS  60
SLVSSPQGDE MAAIGDLIGR LGCICGNNGA SANNSCYSTP LSSPPRAFRG GYAAVDTGGG  120
RLSRVSSSKS LGAAALESSE AEMSPTTAAG DQPAKPSAAA AAAAARKRKS SAKPKASSSS  180
LPTATAATNA SPKRSKVAGD GDSATAAAEE EEKPEPAKDY IHVRARRGQA TDSHSLAERV  240
RRERISERMK LLQSLVPGCN KITGKALMLD EIINYVQSLQ RQVEFLSMKL ATMNPQLDSD  300
SYYMPSKDMS HMPILAYPSG DPTTTTAFSY TGSPATADPF TAYNYWDLDL HTAIQMGVAA  360
TTGLSQDGPV TTMAPSPSPL SHHPPHGFYG K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO681475	0.0	FO681475.1 Oryza sativa ssp indica cv (Guangluai4) Awn-1(An-1) full-length cDNA sequence: OS_Guangluai4_cDNA_An-1, PCR product.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635665.2	1e-160	LOW QUALITY PROTEIN: transcription factor bHLH62
Swissprot	Q9SRT2	2e-59	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0E0KPB8	0.0	A0A0E0KPB8_ORYPU; Uncharacterized protein
STRING	OPUNC04G07110.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12547	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-45	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]