PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G08500.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 199aa MW: 20788.5 Da PI: 6.2649

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G08500.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.7	7.2e-12	80	157	4	87
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++ +s+v ++v+p++fa +k +++ t +grsW +++ ++++ l++GW++F+ +n+L+ gD +vF+l++ OPUNC04G08500.1 80 IMCKSHVQPPFQVVVPRSFAPLLPSK-TTP--AT-LAWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELVDG 157 677899999999******544433.344..33.44699***..88888899*********************8864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.22E-16	74	158	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.4E-15	74	177	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.34E-13	75	176	No hit	No description
PROSITE profile	PS50863	12.167	77	178	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0095	77	178	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-9	78	157	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MASDPTDLRC SSPECSGDAG AEDPAAALDA AEKSGGGGGG GGGEVAAGTE TVAPPRPPEP 60 EKVPRHGVLP LLGKPYFTCI MCKSHVQPPF QVVVPRSFAP LLPSKTTPAT LAWRGRSWGM 120 RFTGGRLIQR LEAGWRGFAV DNDLRLGDGC VFELVDGGGG GDGEHERVEF RVQVLRAEIP 180 ARIRGRAGGY TSATPIVID

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119999	0.0	AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635251.1	1e-98	B3 domain-containing protein Os04g0386900
Swissprot	Q7XLP4	1e-99	Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBL	A0A0E0KPT0	1e-139	A0A0E0KPT0_ORYPU; Uncharacterized protein
STRING	OPUNC04G08500.1	1e-140	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8954	35	45

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]