PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G08530.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27175.7 Da    PI: 7.6199
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G08530.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.12.6e-141150241
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                     rie+  +r + f kR++g+ KKAeEL vLCda v  +++s
  OPUNC04G08530.2 11 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVIS 50
                     8**********************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-12264IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.998250IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-17481IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-10424IPR002100Transcription factor, MADS-box
PfamPF003196.1E-171152IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-102439IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-103960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAVLC DAHVGFVVIS CSDVDAHPHH  60
FAAPATIENI VERYEHSLAA QKGVHGRRIL EKSKSKDFQV PKETILDKGP INDDMRPIDE  120
TDISTLNMDQ TIQIERLLED ELGWIRARKV VADRIARLQK KVQRKPATAE TESNSTEMPS  180
DHEKKQVGGG SQQSAEEEVE VVLSPSLSLG TGGRGDGGGG SAAEQRHRTP PAVDLNVPCR  240
DAGQLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211219GGRGDGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117961e-109AK111796.1 Oryza sativa Japonica Group cDNA clone:J023103N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.11e-128truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLA0A0E0KPT61e-179A0A0E0KPT6_ORYPU; Uncharacterized protein
STRINGORGLA04G0074800.11e-130(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-18AGAMOUS-like 8