PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G09650.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

S1Fa-like

Protein Properties

Length: 56aa MW: 6366.84 Da PI: 11.0234

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G09650.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	118.5	2.5e-37	1	56	15	70
S1FA 15 livllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +ivl+vv+++ll+f+vgny+lyvyaqk+lPPrkkkPvskkk+kreklkqGv++PGe OPUNC04G09650.1 1 MIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE 56 8******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	5.0E-11	1	56	No hit	No description
Pfam	PF04689	6.8E-35	1	56	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 56 aa Download sequence Send to blast
MIVLIVVATF LLLFFVGNYA LYVYAQKTLP PRKKKPVSKK KMKREKLKQG VSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121205	5e-81	AK121205.1 Oryza sativa Japonica Group cDNA clone:J023087P18, full insert sequence.
GenBank	AP014960	5e-81	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	BT131031	5e-81	BT131031.1 Oryza sativa clone RRlibC00345 mRNA sequence.
GenBank	CP012612	5e-81	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CT833993	5e-81	CT833993.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z77, full insert sequence.
GenBank	CU406735	5e-81	CU406735.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C004D01, full insert sequence.
GenBank	CU406867	5e-81	CU406867.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005D03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633609.1	2e-32	DNA-binding protein S1FA2
Swissprot	Q7XLX6	2e-33	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A0D3FVJ5	4e-31	A0A0D3FVJ5_9ORYZ; Uncharacterized protein
STRING	OBART04G11650.1	7e-32	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53370.1	2e-07	S1FA-like DNA-binding protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]