PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G10030.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 121aa    MW: 13458.5 Da    PI: 4.7517
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G10030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.22.5e-093311846
                     HHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
           SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgkl 46
                     ng+lKK +E SvL da+v +iif ++  l
  OPUNC04G10030.1  3 NGLLKKVYEFSVLYDAKVTLIIFTNHEGL 31
                     9**********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.582127IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-8234IPR002100Transcription factor, MADS-box
PfamPF003197.0E-8328IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MQNGLLKKVY EFSVLYDAKV TLIIFTNHEG LCEEEITELK RWLFIGDEMG AKDKLISGAF  60
YGKIHESPVH GPRELGISGV RCIAVSEVFV VRSVLVGEAD NESNNTITMV LREAATMVPQ  120
D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0KQD53e-84A0A0E0KQD5_ORYPU; Uncharacterized protein
STRINGOPUNC04G10030.16e-85(Oryza punctata)