PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G11030.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 380aa    MW: 40008.7 Da    PI: 7.59
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G11030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS132.93.4e-4192372125374
             GRAS 125 WpaLlqaLasRpeg..................ppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledleleeLrvkpg 199
                      Wp+L+q+L++ ++                   + slRiTg+g+    s++el+et+ rL++fA+ + +++fef+  + ++ ++ + + ++++ +
  OPUNC04G11030.1  92 WPSLIQSLSDTAAAatsssshdddgsgscgdgQVSLRITGFGA----SADELRETEARLRRFAAGCpNLRFEFEG-ILNNGSNSRHDCIKIDDD 180
                      8888888887763334455666777777777688*********....9**************998769*******.7999************** PP

             GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnse........sFlerflealeyysalfdsleaklpre 278
                       +++Vnlv+   +        e    + +  + sl+P +v ++e++                     s+l rf+  l+y++a+fdsl++ lp +
  OPUNC04G11030.1 181 ATVVVNLVFPATTNS-----REAWAATAMAYIHSLNPSMVFLIEKNdgggyltG----DndatgrsaSLLPRFAANLQYFAAVFDSLHECLPVD 265
                      *********555554.....33344478****************9977655431....123456666*************************** PP

             GRAS 279 seerikvErellgreivnvvacegae.rrerhetle.......kWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv..lg 361
                      s er  +Er  lgrei+++va    + rr rh   +       +W++++e aGF  v+ls+++++qaklll++ + + g+rv e +g +   l 
  OPUNC04G11030.1 266 SAERLAIERNHLGREIRDAVASLDHRrRRRRHGGGGdhaaaswNWKAAMEGAGFDGVKLSSRTVSQAKLLLKMKSsGGGFRVVEGDGGMAmsLA 359
                      *********************977762555554322222233379******************************8889****99888775799 PP

             GRAS 362 WkdrpLvsvSaWr 374
                       +d +L ++++Wr
  OPUNC04G11030.1 360 GRDMALATATVWR 372
                      99999*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.9711349IPR005202Transcription factor GRAS
PfamPF035141.2E-3892372IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MNLTLSLGID GGAAAAVAKK CKVGGGGGVD GDGGGGGMAF HGGGDGDRGG RVARFLLARD  60
RMVKKAEAFD DHDEDGGIMA ATSDGGGGME LWPSLIQSLS DTAAAATSSS SHDDDGSGSC  120
GDGQVSLRIT GFGASADELR ETEARLRRFA AGCPNLRFEF EGILNNGSNS RHDCIKIDDD  180
ATVVVNLVFP ATTNSREAWA ATAMAYIHSL NPSMVFLIEK NDGGGYLTGD NDATGRSASL  240
LPRFAANLQY FAAVFDSLHE CLPVDSAERL AIERNHLGRE IRDAVASLDH RRRRRRHGGG  300
GDHAAASWNW KAAMEGAGFD GVKLSSRTVS QAKLLLKMKS SGGGFRVVEG DGGMAMSLAG  360
RDMALATATV WRRRRRRRCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-15123374156381Protein SCARECROW
5b3h_A7e-15123374155380Protein SCARECROW
5b3h_D7e-15123374155380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371377RRRRRRR
2372379RRRRRRCR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064580.0AL606458.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634839.11e-127protein MONOCULM 1
TrEMBLA0A0E0KQT50.0A0A0E0KQT5_ORYPU; Uncharacterized protein
STRINGOPUNC04G11030.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.19e-19GRAS family protein