PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G11390.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 365aa    MW: 41079.1 Da    PI: 9.5737
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G11390.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06277300126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y+ e Cr++++   C++ ++C+FaH+
  OPUNC04G11390.2 277 YGVEVCRDYLK-NMCNR-ESCRFAHP 300
                      899********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.48897125IPR000571Zinc finger, CCCH-type
SMARTSM003560.3198124IPR000571Zinc finger, CCCH-type
PfamPF146080.11103123No hitNo description
PROSITE profilePS5010311.836132159IPR000571Zinc finger, CCCH-type
SMARTSM003560.21132158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094174202IPR000571Zinc finger, CCCH-type
SMARTSM003560.019175201IPR000571Zinc finger, CCCH-type
SMARTSM003560.73205229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.291209230IPR000571Zinc finger, CCCH-type
PfamPF146082.2210227No hitNo description
Gene3DG3DSA:4.10.1000.106.4E-4275299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338276302IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-4276301IPR000571Zinc finger, CCCH-type
PfamPF146080.013282300No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MASAETPNPD AEIPIPDDAA ATTDPAAAGS PSPPLPPRKR RLSPTPSPTR RSPRGDRSRS  60
RSRSRSRSRS RSRSRSRSRG RSPSPRYPDG KRRRHNDLTV EVCRDFLRER CARTDIECKY  120
AHPHPTVAVD RDSKVTACAD SLRNNCFRGR TCRYYHPPPH IQESLLRSIG VEDPKVKMVC  180
RDFTRGRCSR SANECRFLHH SPLEDCAIVC QDFLRGRCDR KSCRYSHVMA HPMPPPPMRD  240
IPMQFPDMVY MPPPAPLGVP MMMPPPSAPA TFSGNNYGVE VCRDYLKNMC NRESCRFAHP  300
DLNNEFAVIL SEGNAIDLPV AFTIHLQAQI LLDKVNALPC CRCYRSAAAK SATAAKELLR  360
WLLCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3d2n_A9e-1598165772Muscleblind-like protein 1
5u6h_A1e-14981651479Muscleblind-like protein 1
5u9b_A1e-14981651479Muscleblind-like protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17080RSRSRSRSRGR
27280RSRSRSRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606340.0AK060634.1 Oryza sativa Japonica Group cDNA clone:001-027-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636418.11e-151zinc finger CCCH domain-containing protein 28 isoform X2
SwissprotQ0JD071e-151C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A0E0KQX70.0A0A0E0KQX7_ORYPU; Uncharacterized protein
STRINGOPUNC04G11390.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]