PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G11630.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 112aa    MW: 12591.3 Da    PI: 4.5806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G11630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.5e-161760148
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                     ++y+GVr++k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a+++
  OPUNC04G11630.1 17 CQYRGVRRRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDQ 60
                     78*****998.**********8...325*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.59E-221759No hitNo description
PfamPF008473.5E-101760IPR001471AP2/ERF domain
SMARTSM003806.3E-221875IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-161860IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-231860IPR001471AP2/ERF domain
PROSITE profilePS5103217.3851859IPR001471AP2/ERF domain
PRINTSPR003673.0E-101930IPR001471AP2/ERF domain
PRINTSPR003673.0E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MEEMVAMGRS SSAMAGCQYR GVRRRKWGKW VSEIRQPGTK TRIWLGSFES AEMAAVAHDQ  60
LGGSDEEFDV DSPRLWAEMA EAMLLDPPLW AMDVSEMEGP HCWAHGSLWD AC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316062e-72AL731606.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence.
GenBankCP0126122e-72CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653443.17e-58PREDICTED: dehydration-responsive element-binding protein 1B
TrEMBLA0A0E0KR108e-76A0A0E0KR10_ORYPU; Uncharacterized protein
STRINGOPUNC04G11630.11e-76(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-21ERF family protein