PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G12540.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 451aa    MW: 49638.2 Da    PI: 5.0448
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G12540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3359.27.6e-110413402301
                      XXXXXXXXXXXXXXXXXXXXXX..XXXXX..........XXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa.........tgakksn.ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpve 85 
                      +lkkrmwkdqmll++l++r+    +++ ++         tg+k+++  ++ ++rrk+m raQDg+L++Mlk+me+cna+GfvYgi++e g pv+
  OPUNC04G12540.1  41 DLKKRMWKDQMLLMKLEGRSSGHDGHRPPEgpstqeyrtTGKKEEEePPEARYRRKAMLRAQDGVLRHMLKMMEACNARGFVYGIVDEAGVPVS 134
                      8********************9988888878888888874444443378889****************************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--H CS
             EIN3  86 gasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkel 179
                      g+sdsLr+WWk++++fdr+gp+a+s +       s +s   +++ s  h l ++qD+tlgSLLsal+qhc+ppqr+fpl++g++pPWWPtG e+
  OPUNC04G12540.1 135 GSSDSLRGWWKDDIAFDRAGPTALSRRGGRG---SPRSP-AAAAASFLHGLLDIQDSTLGSLLSALIQHCEPPQRSFPLDRGLPPPWWPTGGEA 224
                      *************************994322...22233.456899************************************************ PP

                      HHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXX CS
             EIN3 180 wwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqsp 272
                      wwg +g ++++qg+ppy+kphdlkkawk+s+L+avikh+sp++++ir+l++qsk+lq+kmsa++ +++++v+ qee++ ++   +         
  OPUNC04G12540.1 225 WWGLQGeAQASQGPPPYRKPHDLKKAWKISLLSAVIKHLSPRFDQIRKLVWQSKRLQHKMSARDADTWSRVITQEEALSRHALRS-------LH 311
                      ****************************************************************************976533222.......22 PP

                      XXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
             EIN3 273 kvtlsceqkedvegkkeskikhvqavktt 301
                       + l++e++++ ++   ++ +h  ++k++
  OPUNC04G12540.1 312 ITPLDDEDDDEANEGPTPRESHTDKRKRE 340
                      33344444444444444444555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048736.2E-11541300No hitNo description
Gene3DG3DSA:1.10.3180.101.1E-63173307IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.48E-56178303IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDKGKAKAEA AAAAEAAPEQ QEEEGFFSDS ESGSESIEIA DLKKRMWKDQ MLLMKLEGRS  60
SGHDGHRPPE GPSTQEYRTT GKKEEEEPPE ARYRRKAMLR AQDGVLRHML KMMEACNARG  120
FVYGIVDEAG VPVSGSSDSL RGWWKDDIAF DRAGPTALSR RGGRGSPRSP AAAAASFLHG  180
LLDIQDSTLG SLLSALIQHC EPPQRSFPLD RGLPPPWWPT GGEAWWGLQG EAQASQGPPP  240
YRKPHDLKKA WKISLLSAVI KHLSPRFDQI RKLVWQSKRL QHKMSARDAD TWSRVITQEE  300
ALSRHALRSL HITPLDDEDD DEANEGPTPR ESHTDKRKRE VGGGGGVELH LSLPADIDVV  360
PEADRSSIDE LMKLYYSCLQ GTDADDGREQ GKDVAAGAGG DRGVARETVH DDDDALVHDD  420
DMLEGLLGVA HVVDMSDFPD SPIWHWGSSS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-491793044128Protein ETHYLENE INSENSITIVE 3
4zds_B4e-491793044128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551640.0CR855164.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0523F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635387.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ51e-89EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A0E0KRD00.0A0A0E0KRD0_ORYPU; Uncharacterized protein
STRINGOPUNC04G12540.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.12e-85EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]