PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G13100.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 664aa MW: 72122.8 Da PI: 7.7361

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G13100.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	430	447	3	20
ETTTTEEESSHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHi 20 C Cg++F+ +++L rH OPUNC04G13100.1 430 CRVCGRRFRARDTLLRHF 447 *****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF102848	2.62E-28	116	207	IPR012989	SEP domain
SMART	SM00553	1.7E-40	119	212	IPR012989	SEP domain
PROSITE profile	PS51399	34.967	122	187	IPR012989	SEP domain
Pfam	PF08059	1.7E-26	127	200	IPR012989	SEP domain
Gene3D	G3DSA:3.10.20.90	1.2E-28	190	297	No hit	No description
SuperFamily	SSF54236	5.94E-21	195	297	IPR029071	Ubiquitin-related domain
PROSITE profile	PS50033	16.656	231	297	IPR001012	UBX domain
Pfam	PF00789	6.6E-14	236	295	IPR001012	UBX domain
PROSITE profile	PS50157	11.177	428	456	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	430	451	IPR007087	Zinc finger, C2H2
CDD	cd06167	4.91E-4	520	572	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding
GO:0051117	Molecular Function	ATPase binding

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MSSSNNGGGD KKPASGGRGG PTIRTLADIS RGPSGFPGGG GGSDSDEPQE YYTGGEKSGM 60 LVQDPTRRNT VDSIFEQARQ MGALQDQPPP FEDQSSSSRS FTGTGRLLSG EAAPAASPPP 120 GNVLHNIHFW NNGFTVDDGP LRDYDDPANA DFIESIKKSQ CPQELEPADR RTPVHVNVIK 180 RLEDYQAPIK PPSPFQGVGR TLGGGSSAEE SLAPAPATQE PRRSVGIVVD DSLPFTSIQL 240 RLADGTRMVA RFNMHHTVGD IRSFIDASRP GATRPYQLQT GFPPKQLADP AQTVEQAVSH 300 LKELRLKSLR GHRVEEHTIP SLKIGPMFPP FSHLRRRPIA AIPNLLHRPS HSLSTSTTPA 360 TRAPTTPVAV LWDLAASRPP STLPLYDAAV RLHLAATSFG RVRLSAAFVH PGHRLPAPSP 420 SAAAATVHLC RVCGRRFRAR DTLLRHFDAI HAREHAKRLA RIDSSRGDRR VRLAAALSLK 480 LSKYEKAARE LTAAAADPCS PADDLRRARV AVELSSTPSV SLMERAHEVL DGGSVRCLML 540 VSGRDELAPL LRLAREKGVR SVVVGGESGP ARWADVGFSW AEVIAGKARK AAPSVSGKWR 600 DRDVLKRLEW RYEDEDEDDD DDDEEEVVFE EDGDEDEIKG LARKTKGKPW WKLESDSEDS 660 SACS

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MSSSNNGGGD KKPASGGRGG PTIRTLADIS RGPSGFPGGG GGSDSDEPQE YYTGGEKSGM  60
LVQDPTRRNT VDSIFEQARQ MGALQDQPPP FEDQSSSSRS FTGTGRLLSG EAAPAASPPP  120
GNVLHNIHFW NNGFTVDDGP LRDYDDPANA DFIESIKKSQ CPQELEPADR RTPVHVNVIK  180
RLEDYQAPIK PPSPFQGVGR TLGGGSSAEE SLAPAPATQE PRRSVGIVVD DSLPFTSIQL  240
RLADGTRMVA RFNMHHTVGD IRSFIDASRP GATRPYQLQT GFPPKQLADP AQTVEQAVSH  300
LKELRLKSLR GHRVEEHTIP SLKIGPMFPP FSHLRRRPIA AIPNLLHRPS HSLSTSTTPA  360
TRAPTTPVAV LWDLAASRPP STLPLYDAAV RLHLAATSFG RVRLSAAFVH PGHRLPAPSP  420
SAAAATVHLC RVCGRRFRAR DTLLRHFDAI HAREHAKRLA RIDSSRGDRR VRLAAALSLK  480
LSKYEKAARE LTAAAADPCS PADDLRRARV AVELSSTPSV SLMERAHEVL DGGSVRCLML  540
VSGRDELAPL LRLAREKGVR SVVVGGESGP ARWADVGFSW AEVIAGKARK AAPSVSGKWR  600
DRDVLKRLEW RYEDEDEDDD DDDEEEVVFE EDGDEDEIKG LARKTKGKPW WKLESDSEDS  660
SACS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6opc_Z	1e-23	38	297	135	411	UBX domain-containing protein 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606653	0.0	AL606653.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02, complete sequence.
GenBank	AL663017	0.0	AL663017.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636930.1	0.0	uncharacterized protein LOC4336084
TrEMBL	A0A0E0KRK5	0.0	A0A0E0KRK5_ORYPU; Uncharacterized protein
STRING	OPUNC04G13100.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2918	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	2e-32	C2H2 family protein