PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G13820.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 258aa    MW: 28462.9 Da    PI: 4.2279
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G13820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.38.4e-12131531128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLp.k..kvka.eek..ewyfFskrdkkyatgkrknratksgyWka 85 
                      lp GfrF+P+d +++ ++L + + +      +  +v++ vd++ + P  +p +  +    +++  + ++F  + +     + + r +  g W  
  OPUNC04G13820.1  13 LPLGFRFRPSDRQIIANHLGPMALHGAdslPQKGDVVEGVDVFATRPDAIPfErrH--VwGRNevRAHYFGDQPTD----S-RGREVPGGAWLP 99 
                      699*****************9988877575444578**************953432..133331356999876554....3.4567799***98 PP

              NAM  86 tgk.....dkevlsk.kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                       g      dk+ + + ++e+v  ++   f        ra +  + +W m+eyrl
  OPUNC04G13820.1 100 CGGgggggDKAYCGAdGEEAVAYRRKYEFRaaaeeADRAGEVARPRWRMKEYRL 153
                      766344435555554678889********9776544577777899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-174182IPR003441NAC domain
PROSITE profilePS5100519.5613183IPR003441NAC domain
PfamPF023655.4E-814153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MASSAHMAAV LNLPLGFRFR PSDRQIIANH LGPMALHGAD SLPQKGDVVE GVDVFATRPD  60
AIPFERRHVW GRNEVRAHYF GDQPTDSRGR EVPGGAWLPC GGGGGGGDKA YCGADGEEAV  120
AYRRKYEFRA AAEEADRAGE VARPRWRMKE YRLNKSAAAF RRAYAQPNPK ANMDCVVREI  180
YTKAAVPPPT PPSGRSGDEE MQEGSDYSVM DEDFEDEDDD DDELVDYLLQ DFEDGDSDED  240
QNQPAAAEDG EYSDEDQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315820.0AL731582.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551890.0CR855189.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634860.11e-147NAC domain-containing protein 67-like
TrEMBLA0A0E0KRU90.0A0A0E0KRU9_ORYPU; Uncharacterized protein
STRINGOPUNC04G13820.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231