PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G14930.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 244aa    MW: 25515.9 Da    PI: 4.925
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G14930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.8e-07446541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+ +e   ++  C  ++  lC+ C +e+H        H++ p
  OPUNC04G14930.1  4 QCDACEAAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46
                     6******99*********************6678888898877 PP
2zf-B_box26.81.1e-085586334
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                      ++C+ ++ek + +fC +++ l+C+dC + +H
  OPUNC04G14930.1 55 LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 86
                     589**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.096147IPR000315B-box-type zinc finger
SMARTSM003364.6E-9447IPR000315B-box-type zinc finger
PfamPF006432.8E-5447IPR000315B-box-type zinc finger
SMARTSM003366.4E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS501198.51753100IPR000315B-box-type zinc finger
PfamPF006432.4E-65696IPR000315B-box-type zinc finger
CDDcd000217.23E-85686No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRIQCDACEA AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLDAA LPAALPRCDV  60
CQEKAAFIFC VEDRALFCRD CDEPIHVPGT LSGNHQRYLA TGIRVGFSSV CSANADHLPP  120
PAPNGNSKPP ASGVAAGASG APKPAVSAAA QEVPSSPFLP PSGWAKGSPL GFKDLEWLDD  180
IDLFHVQSPA KGGSTAAEVP ELFASPQPAS NMGLYKTSGA RQSKKPRVEI PDDDEDFFIV  240
PDLG
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8417670.0CT841767.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103C07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636444.11e-148B-box zinc finger protein 24
SwissprotQ9SID11e-64BBX25_ARATH; B-box zinc finger protein 25
TrEMBLA0A0E0KS891e-176A0A0E0KS89_ORYPU; Uncharacterized protein
STRINGOPUNC04G14930.11e-176(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.13e-41DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]