PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC04G16970.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 207aa MW: 22014 Da PI: 11.0069

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G16970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.5	1.2e-34	55	169	8	89
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.....eaesssssasnsssg....... 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c +a+sss ++ + OPUNC04G16970.1 55 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCssapsTASSSSLLGK----Rprqedqe 144 589*******************************************************888885444432222222222222....12223443 PP TCP 89 ........................k 89 + OPUNC04G16970.1 145 apsfwealqqqprpvsswgalalvS 169 3333333333333433333333321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.6E-31	54	153	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	55	109	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MASRDAATFQ VYRPMAMPTP AAMLPPSSQQ ITMPFKAAPG DAVLPAPRKA AAQGGKDRHS 60 KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTTPAVFS 120 CSSAPSTASS SSLLGKRPRQ EDQEAPSFWE ALQQQPRPVS SWGALALVSP SQEAQAYASS 180 VAQVHHLNLL SALSGAATRR PAQEESR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064708	0.0	AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence.
GenBank	AL663019	0.0	AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855230	0.0	CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.
GenBank	CT831719	0.0	CT831719.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA017A04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635777.1	1e-122	transcription factor TCP21
TrEMBL	A0A0E0KT06	1e-146	A0A0E0KT06_ORYPU; Uncharacterized protein
STRING	OPUNC04G16970.1	1e-146	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-37	TCP family protein