PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G17880.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 252aa    MW: 26739.9 Da    PI: 5.1537
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G17880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06443538
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                      C+ +  + ++ fC  ++  lC  C    H+       H+
  OPUNC04G17880.1  4 QCDVCAAEAASVFCCADEAALCGACDRRVHSAnklagkHR 43
                     7**************************9996566777776 PP
2zf-B_box26.91e-0860101237
         zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      +++ C+ ++ek+  lfC++++  lC++C ++ H        H
  OPUNC04G17880.1  60 KPPLCDICQEKRGFLFCKEDRAILCRECDVAVHTTseltrrH 101
                      6899***************************99544555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.0E-11147IPR000315B-box-type zinc finger
PROSITE profilePS501199.741147IPR000315B-box-type zinc finger
CDDcd000214.92E-6345No hitNo description
PfamPF006431.8E-5444IPR000315B-box-type zinc finger
Gene3DG3DSA:3.30.40.101.7E-552140IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM003363.3E-1459106IPR000315B-box-type zinc finger
PROSITE profilePS5011910.40959106IPR000315B-box-type zinc finger
PfamPF006436.1E-760101IPR000315B-box-type zinc finger
CDDcd000214.11E-962106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MKVQCDVCAA EAASVFCCAD EAALCGACDR RVHSANKLAG KHRRFSLLQP LSSSSSSAQK  60
PPLCDICQEK RGFLFCKEDR AILCRECDVA VHTTSELTRR HSRFLLTGVR LSSAPMDSPA  120
PSVEEEEAEE DYSCSPCSVA GTAAGSASDG SSISEYLIKT LPGWHVEDFL VDEATAAAAA  180
SSSSDGLFQG GLAQIGGVPD GYAAWAGREQ LHSGGAVAAD ERASRELWVP QIHAEWGAGS  240
KRPRASPPCL YW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0613330.0AK061333.1 Oryza sativa Japonica Group cDNA clone:006-303-A11, full insert sequence.
GenBankCT8301690.0CT830169.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA102E21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634023.11e-160B-box zinc finger protein 20 isoform X2
TrEMBLA0A0E0KTC20.0A0A0E0KTC2_ORYPU; Uncharacterized protein
STRINGOPUNC04G17880.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-44DBB family protein